BO25337.complete Sequence
1243 bp assembled on 2010-06-10
GenBank Submission: KX794233
> BO25337.complete
GAAGTTATCAGTCGACATGGATTTGTATGACGGCATTGATACGAGGGCTC
GATCTAGCCAGATTGATGGATGGTCTTCGGGAATAAAAATGTTACAGACC
CAGCTGGCAGTAAAAATGGCTGTCAAAAAACCACTTATGACGCCAGTGGT
TAATCTAAGGTCCAAACGCCTTGCAGATCCAGAAGTTACATGTTTTGCTC
CAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCTTCCA
TCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATGAATA
CGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGTAATG
GCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGATGAC
AAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTTATAG
AGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGC
AAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAG
GGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGA
TAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCGGTGG
CCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGA
AAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAA
ACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCCCTAG
CATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAGCCAC
AAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGA
CATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTTGTTC
TTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGAACCC
GAGGTAAAAGACGAATGCAACACCAAGTACGGGGAAGTGAACAGTGTAAT
CATTCACGAATCGTTCGGAACTGTGCCAGAAGATGCAGTTAAAATATTCG
TAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTGTAGTGGACCTTAAT
GGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGGTTTTACAACTATGA
TAAGTTTAAATGTTTCCAATTACATGCAAGCTTTCTAGACCAT
BO25337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RA | 1212 | CG17540-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
| Spf45-RC | 1092 | CG17540-PC | 1..1089 | 137..1225 | 5445 | 100 | Plus |
| Spf45-RB | 1116 | CG17540-PB | 65..1113 | 177..1225 | 5245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RA | 1397 | CG17540-RA | 71..1279 | 17..1225 | 6045 | 100 | Plus |
| Spf45-RC | 1257 | CG17540-RC | 48..1139 | 134..1225 | 5460 | 100 | Plus |
| Spf45-RB | 1354 | CG17540-RB | 188..1236 | 177..1225 | 5245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23067145..23068144 | 1133..134 | 5000 | 100 | Minus |
| 2L | 23513712 | 2L | 23068200..23068316 | 133..17 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 23066992..23067085 | 1225..1132 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:46 has no hits.
BO25337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:25:09 Download gff for
BO25337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 132..1340 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:37 Download gff for
BO25337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 71..1279 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:11 Download gff for
BO25337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 71..1279 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:11 Download gff for
BO25337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23066990..23067083 | 1134..1227 | 97 | <- | Minus |
| 2L | 23067145..23068144 | 134..1133 | 100 | <- | Minus |
| 2L | 23068200..23068316 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:37 Download gff for
BO25337.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22960932..22961048 | 17..133 | 100 | | Minus |
| arm_2L | 22959722..22959815 | 1134..1227 | 97 | <- | Minus |
| arm_2L | 22959877..22960876 | 134..1133 | 100 | <- | Minus |
BO25337.pep Sequence
Translation from 16 to 1243
> BO25337.pep
MDLYDGIDTRARSSQIDGWSSGIKMLQTQLAVKMAVKKPLMTPVVNLRSK
RLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRP
NEYEKLKEKSNGSDKNRAGVSDREDRDDKEKDRKRGRVGRREFYRDEVSA
PNLKLSGFGHRQNDDDMYLPSPGLVAKQGGATIAPPPSLQEMSIDSGCEA
TNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRI
IHEKDVFLPPLALSPPSIGSQIGTSPSHKAMPPPQMVDTAAESGDIGYSI
TEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHESF
GTVPEDAVKIFVEFRRIESAIKAVVDLNGRFFGGRQVRAGFYNYDKFKCF
QLHASFLDH
BO25337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-PA | 403 | CG17540-PA | 1..403 | 1..403 | 2086 | 100 | Plus |
| Spf45-PC | 363 | CG17540-PC | 1..363 | 41..403 | 1885 | 100 | Plus |
| Spf45-PB | 371 | CG17540-PB | 6..371 | 38..403 | 1819 | 95.9 | Plus |
| pUf68-PJ | 545 | CG12085-PJ | 444..538 | 308..397 | 192 | 47.9 | Plus |
| pUf68-PI | 545 | CG12085-PI | 444..538 | 308..397 | 192 | 47.9 | Plus |
