BO25346.complete Sequence
1594 bp assembled on 2010-06-16
GenBank Submission: KX797874
> BO25346.complete
GAAGTTATCAGTCGACATGGAAAGCGAGCGGCTGCGAATCACGCTGGACA
GCGCGGATCGGGTTTACTTTGCGGGCGACATAATTCGCGGCGAGATCTGG
ATGAACGTCAACAAGCGCACCAAAATACGCGCCATCAAGGTGCAGGTCAC
CGGCAAGGGAAAATGCAAATGGATGGAGATCCTGCGCAAGAACTCGAACA
ACAACGAGTACTCCCGCAGTCTGTTCTACACCAGCAAAGAGGTGTACGAG
CATAGCGAGACGCCTCTGCCGGATTTTGAGCCGCGTGGCCTGGAACTTTC
GGCTGGGGAGCACACGTTCATCTTCGAGGTGGCGCTGGGTCGCCAGCTAC
CTTCGAGTTTCAAGGGCAGCTATGGCGCCATCAAGTACAAGATGCGCGTG
CTCATCCAGCGACCATGGACCTTCGACGAGCGCCACACGATTCCTTTCAC
CGTGGTGAAGAACATGCCGCTCCAACCGATGCAACGCAGCATACCCAGTT
CGCTGGAGAAGCAGGTGACCAAGACGATCAGTTTGTTTGGCACTAGACCG
ATCACCCTGTTGGCCCTTCTGCCCGAAGATTTTGCGGTGCGCGGAGAGCC
GCTTAGGATTTGCGCTACTGTGATCAACAACAGCACCACCGCTGTGGAGA
AGCTGCGCTTTACCGTCCTGCAGTACGTGACCTACTACAGCCATGTACCA
CTGCGGGTGCAGAAGGTGGAGTGCATAGCGGTGGCCACCAAGGAGACGGG
CTCGGTGCAGAAGAAGACCGAGCGGAGTTTTGCGCACGAGCTGCTCCTGC
CCGATGGAGCCCAGCCGACGGATGAACAGATGAGCGGCGTCATCACCATT
GTATACGAGCTGCGTGTGGAGGCGGTGCTGCGGGGATTCTTTAAGAACTT
GATCCTTAATTTGCCCTTTAAGGTGTACTCGCAGGATCCATCGAATAGGC
AGAGTTCGCTGCGTCCGCCGCCGCCGCCACGGCCTAACGATGGACCACCT
GGTCCGGAATTGGGCTCCGGCAATCTGTTTGAGCCCGCCCTGCCGGTCTA
TCCCTCACTGGACTCTTCCATTGGCTCGCCCTCGCACTCATCGCAGTTTA
GCGAGTGCAGCTCCATTAACTCGATAACCTCGGACTCCTCGGCGGCCACT
CTGAGTCCCGCTGTGGGCGCTGGAACCGGTGGCATGGATATGTCCTACAC
TTCGGGCTCCCAGTCCTCGCAGTATGGTAGTCCCTCTGCCAGGACCAGCT
TGCGCAGCTCCAATGTGCCCTACATGCCCTATTCGTCCAGTCCCCTTATG
GTGCAGTCGTATCCGCCACCCCATCTGCCCGCCTACCCGCCGCCGGAGTC
GCCGCAATACTCGCTCCTTGCCCTCACACCACCGCCGGCCGGAGTGGTCG
CCGCCCCGCCAACAGGCGGTGCAGCAGCAGGAGGAGCTCCGGCCTATAGC
CAACTGCCATCCACCTCGGCCTCAGCATCGTTCCTGCAGCCTCGCCAGGC
GCCTGGAGCCCATGAGCTGCCACCTTCATACGAAGAGCTCTTCGGCTTGG
CCAACGCACCTCCGGGAACTCCAAAGGCAAGCTTTCTAGACCAT
BO25346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Leash-RA | 1563 | CG4674-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Leash-RA | 3180 | CG4674-RA | 434..1993 | 17..1576 | 7800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10893729..10895118 | 131..1520 | 6950 | 100 | Plus |
| 3R | 32079331 | 3R | 10885973..10886087 | 17..131 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 10895176..10895231 | 1521..1576 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:44:09 has no hits.
BO25346.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-16 11:09:23 Download gff for
BO25346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 427..1986 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:13 Download gff for
BO25346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 434..1993 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:55 Download gff for
BO25346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Leash-RA | 434..1993 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:55 Download gff for
BO25346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10885973..10886087 | 17..131 | 100 | -> | Plus |
| 3R | 10893730..10895118 | 132..1520 | 100 | -> | Plus |
| 3R | 10895176..10895231 | 1521..1578 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:13 Download gff for
BO25346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6711695..6711809 | 17..131 | 100 | -> | Plus |
| arm_3R | 6719452..6720840 | 132..1520 | 100 | -> | Plus |
| arm_3R | 6720898..6720953 | 1521..1578 | 96 | | Plus |
BO25346.pep Sequence
Translation from 16 to 1594
> BO25346.pep
MESERLRITLDSADRVYFAGDIIRGEIWMNVNKRTKIRAIKVQVTGKGKC
KWMEILRKNSNNNEYSRSLFYTSKEVYEHSETPLPDFEPRGLELSAGEHT
FIFEVALGRQLPSSFKGSYGAIKYKMRVLIQRPWTFDERHTIPFTVVKNM
PLQPMQRSIPSSLEKQVTKTISLFGTRPITLLALLPEDFAVRGEPLRICA
TVINNSTTAVEKLRFTVLQYVTYYSHVPLRVQKVECIAVATKETGSVQKK
TERSFAHELLLPDGAQPTDEQMSGVITIVYELRVEAVLRGFFKNLILNLP
FKVYSQDPSNRQSSLRPPPPPRPNDGPPGPELGSGNLFEPALPVYPSLDS
SIGSPSHSSQFSECSSINSITSDSSAATLSPAVGAGTGGMDMSYTSGSQS
SQYGSPSARTSLRSSNVPYMPYSSSPLMVQSYPPPHLPAYPPPESPQYSL
LALTPPPAGVVAAPPTGGAAAGGAPAYSQLPSTSASASFLQPRQAPGAHE
LPPSYEELFGLANAPPGTPKASFLDH
BO25346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Leash-PA | 520 | CG4674-PA | 1..520 | 1..520 | 2698 | 100 | Plus |
| CG18745-PA | 433 | CG18745-PA | 17..304 | 17..305 | 334 | 29.6 | Plus |
| CG10086-PA | 469 | CG10086-PA | 2..306 | 3..303 | 331 | 29.5 | Plus |
| CG18747-PB | 418 | CG18747-PB | 17..357 | 17..359 | 322 | 27.8 | Plus |
| CG1105-PA | 422 | CG1105-PA | 8..351 | 8..333 | 312 | 25.1 | Plus |
