BO25353.complete Sequence
520 bp assembled on 2010-06-10
GenBank Submission: KX795531
> BO25353.complete
GAAGTTATCAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGT
CGTACAACACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGC
CGTCTGGTGTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGG
TCAGTGCAAGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGC
GTCCCAGGATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGT
GTCCTGTGCCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCAT
CGAAGAGCAGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGG
TCAAGCCCGTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCC
AAGAAGCCCGCGGGAAAGGCAGCCGGAAAGCCAGGTGCCAAAGTCGCCGG
CAAGAAGCCCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGA
AGGCAAGCTTTCTAGACCAT
BO25353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-RC | 489 | CG6090-PC | 1..486 | 17..502 | 2430 | 100 | Plus |
RpL34a-RB | 489 | CG6090-PB | 1..486 | 17..502 | 2430 | 100 | Plus |
RpL34a-RA | 489 | CG6090-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-RC | 603 | CG6090-RC | 41..526 | 17..502 | 2430 | 100 | Plus |
RpL34a-RB | 621 | CG6090-RB | 59..544 | 17..502 | 2430 | 100 | Plus |
RpL34a-RA | 606 | CG6090-RA | 44..529 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26058497..26058917 | 502..82 | 2105 | 100 | Minus |
3R | 32079331 | 3R | 9400596..9400878 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 26058980..26059044 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1445..1520 | 335..406 | 118 | 65.8 | Plus |
BO25353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:21 Download gff for
BO25353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 40..525 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:11 Download gff for
BO25353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..529 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:13 Download gff for
BO25353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..529 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:13 Download gff for
BO25353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26058495..26058917 | 82..504 | 99 | <- | Minus |
3R | 26058980..26059044 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:11 Download gff for
BO25353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21884217..21884639 | 82..504 | 99 | <- | Minus |
arm_3R | 21884702..21884766 | 17..81 | 100 | | Minus |
BO25353.pep Sequence
Translation from 16 to 520
> BO25353.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKKVVEKKPVKAAAKKPAGKAAGKPGAKVAGKKPAP
KGAPKGVVKSKKASFLDH
BO25353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-PC | 162 | CG6090-PC | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34a-PB | 162 | CG6090-PB | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34a-PA | 162 | CG6090-PA | 1..162 | 1..162 | 827 | 100 | Plus |
RpL34b-PD | 168 | CG9354-PD | 1..162 | 1..153 | 618 | 82.7 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..162 | 1..153 | 618 | 82.7 | Plus |