Clone BO25353 Report

Search the DGRC for BO25353

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptRpL34a-RA
Protein status:BO25353.pep: Imported from assembly
Sequenced Size:520

Clone Sequence Records

BO25353.complete Sequence

520 bp assembled on 2010-06-10

GenBank Submission: KX795531

> BO25353.complete
GAAGTTATCAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGT
CGTACAACACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGC
CGTCTGGTGTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGG
TCAGTGCAAGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGC
GTCCCAGGATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGT
GTCCTGTGCCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCAT
CGAAGAGCAGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGG
TCAAGCCCGTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCC
AAGAAGCCCGCGGGAAAGGCAGCCGGAAAGCCAGGTGCCAAAGTCGCCGG
CAAGAAGCCCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGA
AGGCAAGCTTTCTAGACCAT

BO25353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34a-RC 489 CG6090-PC 1..486 17..502 2430 100 Plus
RpL34a-RB 489 CG6090-PB 1..486 17..502 2430 100 Plus
RpL34a-RA 489 CG6090-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34a-RC 603 CG6090-RC 41..526 17..502 2430 100 Plus
RpL34a-RB 621 CG6090-RB 59..544 17..502 2430 100 Plus
RpL34a-RA 606 CG6090-RA 44..529 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26058497..26058917 502..82 2105 100 Minus
3R 32079331 3R 9400596..9400878 364..82 830 86.2 Minus
3R 32079331 3R 26058980..26059044 81..17 325 100 Minus
Blast to na_te.dros performed 2014-11-28 02:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 1445..1520 335..406 118 65.8 Plus

BO25353.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:21 Download gff for BO25353.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RA 40..525 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:11 Download gff for BO25353.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RA 44..529 17..504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:13 Download gff for BO25353.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RA 44..529 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:13 Download gff for BO25353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26058495..26058917 82..504 99 <- Minus
3R 26058980..26059044 17..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:11 Download gff for BO25353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21884217..21884639 82..504 99 <- Minus
arm_3R 21884702..21884766 17..81 100   Minus

BO25353.pep Sequence

Translation from 16 to 520

> BO25353.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKKVVEKKPVKAAAKKPAGKAAGKPGAKVAGKKPAP
KGAPKGVVKSKKASFLDH

BO25353.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34a-PC 162 CG6090-PC 1..162 1..162 827 100 Plus
RpL34a-PB 162 CG6090-PB 1..162 1..162 827 100 Plus
RpL34a-PA 162 CG6090-PA 1..162 1..162 827 100 Plus
RpL34b-PD 168 CG9354-PD 1..162 1..153 618 82.7 Plus
RpL34b-PC 168 CG9354-PC 1..162 1..153 618 82.7 Plus