Clone BO25354 Report

Search the DGRC for BO25354

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptcrok-RA
Protein status:BO25354.pep: Imported from assembly
Sequenced Size:487

Clone Sequence Records

BO25354.complete Sequence

487 bp assembled on 2010-06-10

GenBank Submission: KX796575

> BO25354.complete
GAAGTTATCAGTCGACATGAAAACACTGGAGAAATATATCCTATTCGCCA
TCGTGCTCTGCTGCCTGCTGCAATTGGGCCAGGCGATCAAATGTTGGGAC
TGTCGCAGCGATAACGATCCCAAATGCGGGGATCCTTTTGACAACAGCAC
GCTGGCCATCACCGATTGCCAACAGGCGCCGGAGCTGGAGCATCTGAAGG
GCGTGCGACCGACAATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTGAA
TGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAGGG
CGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCATGG
AGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCCAT
AGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATTGT
GGCTCATCTTCTGCGGCAAGCAAGCTTTCTAGACCAT

BO25354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
crok-RA 456 CG17218-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
crok-RA 1033 CG17218-RA 90..542 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12173208..12173600 77..469 1965 100 Plus
2L 23513712 2L 12173070..12173131 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:59:33 has no hits.

BO25354.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:22 Download gff for BO25354.complete
Subject Subject Range Query Range Percent Splice Strand
CG17218-RA 87..539 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:16 Download gff for BO25354.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..542 17..471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:16 Download gff for BO25354.complete
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..542 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:16 Download gff for BO25354.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12173070..12173130 17..77 100 -> Plus
2L 12173209..12173600 78..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:16 Download gff for BO25354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12173070..12173130 17..77 100 -> Plus
arm_2L 12173209..12173600 78..471 99   Plus

BO25354.pep Sequence

Translation from 16 to 487

> BO25354.pep
MKTLEKYILFAIVLCCLLQLGQAIKCWDCRSDNDPKCGDPFDNSTLAITD
CQQAPELEHLKGVRPTMCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFC
LMRTGSYNIFMEFCTCNSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLR
QASFLDH

BO25354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
crok-PA 151 CG17218-PA 1..151 1..151 831 100 Plus
CG6329-PF 155 CG6329-PF 5..122 4..125 255 39.8 Plus
CG6329-PE 155 CG6329-PE 5..122 4..125 255 39.8 Plus
CG6329-PD 155 CG6329-PD 5..122 4..125 255 39.8 Plus
CG6329-PB 155 CG6329-PB 5..122 4..125 255 39.8 Plus