Clone BO25360 Report

Search the DGRC for BO25360

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG9548-RA
Protein status:BO25360.pep: Imported from assembly
Sequenced Size:367

Clone Sequence Records

BO25360.complete Sequence

367 bp assembled on 2010-06-10

GenBank Submission: KX795820

> BO25360.complete
GAAGTTATCAGTCGACATGGCCAAACATCATCCGGATTTGATTTTCTGCC
GCAAGCAGCCCGGCGTGGCCATTGGACGCCTGTGTGAAAAAGACGATGGA
AAGTGTGTGATCTGCGACTCCTACGTGCGGCCATGCACACTGGTGCGGAT
CTGCGACGAGTGCAACTACGGATCCTACCAGGGCAGGTGCGTCATCTGTG
GAGGACCCGGAGTGTCGGATGCCTACTACTGCAAGTCCTGCACCATTCAG
GAAAAGGACCGCGACGGATGCCCCAAGATTGTAAATCTAGGCAGCTCCAA
GACTGACCTGTTCTACGAACGCAAGAAATATGGCTTCAAACAGAACTATG
CAAGCTTTCTAGACCAT

BO25360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-RA 336 CG9548-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-RA 483 CG9548-RA 86..419 16..349 1670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6490439..6490630 259..68 960 100 Minus
2L 23513712 2L 6490288..6490373 345..260 430 100 Minus
2L 23513712 2L 6490706..6490758 68..16 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:00:10 has no hits.

BO25360.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:27 Download gff for BO25360.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 72..404 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:35 Download gff for BO25360.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 87..419 17..351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:28 Download gff for BO25360.complete
Subject Subject Range Query Range Percent Splice Strand
CG9548-RA 87..419 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:28 Download gff for BO25360.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6490280..6490373 260..351 95 <- Minus
2L 6490439..6490629 69..259 100 <- Minus
2L 6490706..6490757 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:35 Download gff for BO25360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6490280..6490373 260..351 95 <- Minus
arm_2L 6490439..6490629 69..259 100 <- Minus
arm_2L 6490706..6490757 17..68 100   Minus

BO25360.pep Sequence

Translation from 16 to 367

> BO25360.pep
MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECN
YGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFY
ERKKYGFKQNYASFLDH

BO25360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9548-PA 111 CG9548-PA 1..111 1..111 633 100 Plus