Clone BO25363 Report

Search the DGRC for BO25363

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptSgt1-RA
Protein status:BO25363.pep: Imported from assembly
Sequenced Size:568

Clone Sequence Records

BO25363.complete Sequence

568 bp assembled on 2010-06-10

GenBank Submission: KX795305

> BO25363.complete
GAAGTTATCAGTCGACATGTCCGTGCGCCACGACTGGTACCAGTCGGAGA
CCAAGGTGGTCATCACCGTGCTCCTGAAGAACGCCGTCGATAAGAACTAT
GCTGTGGAGATTACCCAGAAGCGAGTCCACATGACGGCGGATGGCTACGA
GTTGGACCTGAAGCTGCTTCATCCCATTGTTGTGGAGCGTTCCTCCTACA
AGGCCTTTTCGACCAAAGTGGAAATCACACTGGCTAAGGAGACGGGAATT
CGGTGGGAGAATCTGGAGGAGGCCATCGTGGCTGCACCGGTGAAACCCAA
GGCCAAGAACTGGGACCAGCTGGTCAGCGAGGAGGAAAAGATCGACGAGA
AGGAGGCCAAGGGCGAGGCGGCCCTCACCAACCTGTTCAAGAAAATCTAC
AGCTCATCCTCGCCCGAGGTCCAAAAGGCCATGAACAAGTCCTTCTCGGA
GTCCGGAGGCACCGTGCTCAGCACCAACTGGAATGAGGTGGGCAAAGAAA
GAGTCACCGTGAAGCCTCCAAATGGAACCGAGTTCCGCGAGTGGGAGAAG
GCAAGCTTTCTAGACCAT

BO25363.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-RA 537 CG9617-PA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-RA 1085 CG9617-RA 153..686 17..550 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8304589..8305122 550..17 2670 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:00:38 has no hits.

BO25363.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:31 Download gff for BO25363.complete
Subject Subject Range Query Range Percent Splice Strand
CG9617-RA 137..670 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:49 Download gff for BO25363.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 153..686 17..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:39 Download gff for BO25363.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 153..686 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:39 Download gff for BO25363.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8304587..8305122 17..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:49 Download gff for BO25363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4130309..4130844 17..552 99   Minus

BO25363.pep Sequence

Translation from 16 to 568

> BO25363.pep
MSVRHDWYQSETKVVITVLLKNAVDKNYAVEITQKRVHMTADGYELDLKL
LHPIVVERSSYKAFSTKVEITLAKETGIRWENLEEAIVAAPVKPKAKNWD
QLVSEEEKIDEKEAKGEAALTNLFKKIYSSSSPEVQKAMNKSFSESGGTV
LSTNWNEVGKERVTVKPPNGTEFREWEKASFLDH

BO25363.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-PA 178 CG9617-PA 1..178 1..178 912 100 Plus