Clone BO25365 Report

Search the DGRC for BO25365

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG17734-RB
Protein status:BO25365.pep: Inserted from web
Sequenced Size:319

Clone Sequence Records

BO25365.complete Sequence

319 bp assembled on 2010-06-10

GenBank Submission: KX796136

> BO25365.complete
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTA
CAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGC
TGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTG
GCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAA
GGCAAGCTTTCTAGACCAT

BO25365.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RB 288 CG17734-PB 1..285 17..301 1425 100 Plus
CG17734-RA 306 CG17734-PA 1..284 17..300 1420 100 Plus
CG11825-RC 411 CG11825-PC 109..379 17..287 695 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RB 1024 CG17734-RB 125..409 17..301 1425 100 Plus
CG17734-RA 764 CG17734-RA 125..408 17..300 1420 100 Plus
CG17734-RC 1317 CG17734-RC 511..702 110..301 960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11242823..11243014 301..110 960 100 Minus
2R 25286936 2R 10420733..10421003 287..17 695 83.8 Minus
3R 32079331 3R 11243780..11243875 112..17 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:00:52 has no hits.

BO25365.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:33 Download gff for BO25365.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 102..386 17..303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:56 Download gff for BO25365.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 125..409 17..303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:44 Download gff for BO25365.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 125..409 17..303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:44 Download gff for BO25365.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11242821..11243013 111..303 98 <- Minus
3R 11243782..11243875 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:56 Download gff for BO25365.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7068543..7068735 111..303 98 <- Minus
arm_3R 7069504..7069597 17..110 100   Minus

BO25365.pep Sequence

Translation from 16 to 319

> BO25365.pep
MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGITGFVAAGLIGAYKYRNR
GTMSTSVFLMQLRVAAQGTVVGCLTLGLAYSMAKEYLFDKAPKEKASFLD
H

BO25365.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-PB 95 CG17734-PB 1..95 1..95 470 100 Plus
CG17734-PA 101 CG17734-PA 1..99 1..99 467 96 Plus
CG11825-PA 100 CG11825-PA 1..93 1..93 398 84.9 Plus
CG11825-PC 136 CG11825-PC 37..129 1..93 398 84.9 Plus
CG11825-PD 72 CG11825-PD 1..65 29..93 286 87.7 Plus