Clone BO25370 Report

Search the DGRC for BO25370

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptJTBR-RA
Protein status:BO25370.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO25370.complete Sequence

490 bp assembled on 2010-06-10

GenBank Submission: KX795703

> BO25370.complete
GAAGTTATCAGTCGACATGCTCGAGAACTGTCAGCGTCACCACATGCTCC
TTGGACTAGGAGCCCTAACGATGGTCACCATACTCGTCCTGTTCGTGGAA
TCTCGTTACGCGGCAGATGGTCCTCGTCGCCGAGAGCCGCAATTCGTGAT
CGAGGACAACTCGACCTGCTGGCGGAATGAGAAGTACACGATGGTGCAGG
AGTGCCACCCGTGCTCCGAATTCGATATAGTCAGCCGGAGCTTGGGCGTC
TGCATTCACACGCACTACAAGGAGGTGCTGCGCTGCCAGAGCGGCGAGAT
CGTAACCAGGAGCTGCGACCGGGTGGCGCTCATCGAGCAAATGAACTTCT
TGAAATTTGAGGTCTCGTGCTTTGTAATCGGATTACTTAGCTACCTGGTC
AGTTATGCCCGCGATCGAGTCCTGTCCAGGCGCAACTACATGAGAATCGA
GCGACAGCTAAACCGGGTCCAAGCAAGCTTTCTAGACCAT

BO25370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
JTBR-RC 459 CG1935-PC 1..456 17..472 2280 100 Plus
JTBR-RB 459 CG1935-PB 1..456 17..472 2280 100 Plus
JTBR-RA 459 CG1935-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
JTBR-RC 799 CG1935-RC 114..569 17..472 2280 100 Plus
JTBR-RB 789 CG1935-RB 104..559 17..472 2280 100 Plus
JTBR-RA 849 CG1935-RA 164..619 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1802238..1802693 472..17 2280 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:01:45 has no hits.

BO25370.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:39 Download gff for BO25370.complete
Subject Subject Range Query Range Percent Splice Strand
JTBR-RA 143..598 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:20 Download gff for BO25370.complete
Subject Subject Range Query Range Percent Splice Strand
JTBR-RA 164..619 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:04 Download gff for BO25370.complete
Subject Subject Range Query Range Percent Splice Strand
JTBR-RA 164..619 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:04 Download gff for BO25370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1802234..1802693 17..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:20 Download gff for BO25370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1802234..1802693 17..474 99   Minus

BO25370.pep Sequence

Translation from 16 to 490

> BO25370.pep
MLENCQRHHMLLGLGALTMVTILVLFVESRYAADGPRRREPQFVIEDNST
CWRNEKYTMVQECHPCSEFDIVSRSLGVCIHTHYKEVLRCQSGEIVTRSC
DRVALIEQMNFLKFEVSCFVIGLLSYLVSYARDRVLSRRNYMRIERQLNR
VQASFLDH

BO25370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
JTBR-PC 152 CG1935-PC 1..152 1..152 799 100 Plus
JTBR-PB 152 CG1935-PB 1..152 1..152 799 100 Plus
JTBR-PA 152 CG1935-PA 1..152 1..152 799 100 Plus