BO25374.complete Sequence
1057 bp assembled on 2010-06-10
GenBank Submission: KX796292
> BO25374.complete
GAAGTTATCAGTCGACATGACAAACTTTCTGGATCAATTGCCCAAGCATA
TCAGAGAAATCGCCGAGCAGGTTAATGTTCTCGCACCGGAGGAGGTGCTG
ACAACTCCCAAGGTGCGATTCCTGGACACCCGCCAGCAATCGCTGCACAC
AATCGTGCGAAAATGCACTCCGGATGATGTTAGGGTGCTCAAGGATGCGG
CAGCCAAGTGGCTGGCAGAGATGCCCCAGTCAGCGGATTCCCTCTTCAAG
CCGCTTGTCAATGTTAGATGGTCGCGGGTGTCGTTTGGATGTTCCGCTTT
AGATCGCTGCACGGGCGGGGGAGTGGTCACTCGTGGAATTACAGAGCTAT
GTGGAGCAGCCGGCGTGGGCAAGACCCAGTTGCTTCTTCAGCTATCCCTT
TGTGTCCAGCTACCCCGTGAGTTGGGTGGCTTGGGCAAAGGCGTGGCCTA
CATATGCACGGAGAGTTCCTTTCCGGCGAGAAGATTGCTGCAGATGAGCA
AAGCCTGCGAGAAGAGGCATCCCGAAATGGAGCTGAATTTTCTGGGAAAC
ATCTTTGTGGAAAATCACATTGAGGCAGAACCTCTCCTGGCGTGCGTTAT
AAACCGCATTCCGCGACTGATGCAACAACATGGCATTGGCCTGATCATTA
TTGATTCTGTGGCCGCCATATTCCGGCTGTATAATGATTATCTGGAACGA
GCGAGACATATGCGTCGACTGGCAGACGCTCTGCTCAGCTACGCGGATAA
GTACAACTGTGCCGTGGTCTGTGTGAATCAGGTGGCCACCAGGGACGGTC
AGGATGAGATTCCCTGCTTGGGATTGCAGTGGGCGCACCTAGGACGCACT
AGACTGCGTGTTTCCCGGGTGCCCAAGCAGCATCGCATGGGTGATCAACT
GATAACGGTGCGCAAACTGGAAATACTTTACTCACCAGAGACTCCCAATG
ATTTCGCCGAGTTTCTTATCACCGCAGAAGGTGTGGTCAATGTTCCAGAG
CCATCTGTTCCCAGCCCACCCGCCAAAATGCGTCGACTGGCAAGCTTTCT
AGACCAT
BO25374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-B-RA | 1026 | CG3325-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-B-RA | 1384 | CG3325-RA | 161..1183 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14328946..14329407 | 578..1039 | 2310 | 100 | Plus |
| 3R | 32079331 | 3R | 14328546..14328893 | 231..578 | 1740 | 100 | Plus |
| 3R | 32079331 | 3R | 14328325..14328494 | 71..240 | 820 | 98.8 | Plus |
| 3R | 32079331 | 3R | 14328211..14328269 | 17..75 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:08 has no hits.
BO25374.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:25:36 Download gff for
BO25374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 148..1170 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:15 Download gff for
BO25374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 161..1183 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:50 Download gff for
BO25374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 161..1183 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:50 Download gff for
BO25374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14328211..14328265 | 17..71 | 100 | -> | Plus |
| 3R | 14328326..14328487 | 72..233 | 100 | -> | Plus |
| 3R | 14328549..14328892 | 234..577 | 100 | -> | Plus |
| 3R | 14328946..14329407 | 578..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:15 Download gff for
BO25374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10153933..10153987 | 17..71 | 100 | -> | Plus |
| arm_3R | 10154048..10154209 | 72..233 | 100 | -> | Plus |
| arm_3R | 10154271..10154614 | 234..577 | 100 | -> | Plus |
| arm_3R | 10154668..10155129 | 578..1041 | 99 | | Plus |
BO25374.pep Sequence
Translation from 16 to 1057
> BO25374.pep
MTNFLDQLPKHIREIAEQVNVLAPEEVLTTPKVRFLDTRQQSLHTIVRKC
TPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSALDRCTG
GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTES
SFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPR
LMQQHGIGLIIIDSVAAIFRLYNDYLERARHMRRLADALLSYADKYNCAV
VCVNQVATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRK
LEILYSPETPNDFAEFLITAEGVVNVPEPSVPSPPAKMRRLASFLDH
BO25374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-B-PA | 341 | CG3325-PA | 1..341 | 1..341 | 1768 | 100 | Plus |
| spn-D-PA | 270 | CG31069-PA | 44..255 | 86..289 | 188 | 28.8 | Plus |
| spn-A-PB | 279 | CG7948-PB | 41..278 | 87..328 | 185 | 30.9 | Plus |
| spn-A-PA | 336 | CG7948-PA | 98..335 | 87..328 | 185 | 30.9 | Plus |
