BO25375.complete Sequence
1300 bp assembled on 2010-06-10
GenBank Submission: KX798881
> BO25375.complete
GAAGTTATCAGTCGACATGACGGCAACCAAGCAGCAAGAGGCTGAGGCCG
AACATGATCCCCAAGTGGTGGTCACCCCTGGAGACGCCTCTCGCAGCTCT
CGCCAAGATCGGGGTCTATGGCGGGATCTTACTTCCTACTGGATCCTCGG
TCTGTGCAACAACTACGGATACGTGGTGATGCTGAGTGCTGCGCACGATA
TTATCAAGCAGTTTAATCCGAATGATGAATCGGAAGAAAGCTCGTCGGGA
AGAAACTGTCACTTGGTTTCAACAGGTGCCATCTTGCTGGCAGACGTGCT
GCCCTCATTATTTGTCAAGATTCTAATGCCATTCTTTCCATTTTGGGTGA
ATTTCCGTATAGCTCTTGCCGTGGCCTTTTCTGCAGCTGGTTTCCTCCTG
GTTGGATTCGCCAATGCCGAATGGATGGCTCTTTTGGGTGTCATCATCAC
TTCGGCTAGCAGCGGAATAGGAGAAACCACTTTCTTGGCCTATTCTTCGC
GATACAATAAGAATGTGATCTCCACTTGGTCGTCCGGAACTGGTGGCGCT
GGAGTTATCGGATCCTTGAGCTATGCTAGCTTGAGATCCTTAGACTTCAG
TCCCAGAGATACTATGCTGATTATGCTGATCTTCCCTGCGATCGAGGCCT
TTGCATTCTGGTTGCTGCTTCGTCGTCCACAAGTTGATATATTGCCGGTT
ACCACGGTTGAGTCCACGGAAGTCCTGATCAGCGATGAGAAGCCATTAGT
TGGGTTCAAGGAAAAGCTCTTCTATATCAAGCACCTCTTCAAATATATGT
TGCCCCTTTGCCTGGTTTACTTCTTCGAATACTTCATCAATCAAGGATTG
TTCGAACTGGTTTACTTTGAAGATATATTCCTGGACAAGGACTCGCAGTA
CCGCTGGCTAAATGTGGACTATCAGATCGGAGTCTTTATCTCGCGCTCCT
CTGTCAATCTCTTCCAGCTGGACAAGATCTGGCTGATGTCCATCTTCCAG
TTCGTCAACGTGGTATACTTCCTCACCGAGGTTATCTGGTGGTACACGCC
TAGCATCTGGATCGTGTTCGCCATCGTCCTGTGGGAGGGACTTCTGGGCG
GCGGTGCTTACGTGAACACCTTCTATCGGATGTCCAAGGAGATTTCGCCG
GAGCGCCAGCAGTTCGCCATGGCCATGGTGGTACAGTCGGACTCCTATGG
CATTGCTCTGGCCGGATTTCTGGCCATTCCCGTGCACAACGCCATCTGTG
GTCTTCCGGCCGCGGCCAGAAGCCTTGTTTGGGCAAGCTTTCTAGACCAT
BO25375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1269 | CG5582-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| cln3-RA | 1269 | CG5582-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1589 | CG5582-RB | 107..1372 | 17..1282 | 6330 | 100 | Plus |
| cln3-RA | 1553 | CG5582-RA | 71..1336 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17809448..17809880 | 1282..850 | 2165 | 100 | Minus |
| 3L | 28110227 | 3L | 17809937..17810276 | 850..511 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 17810786..17810989 | 220..17 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 17810335..17810494 | 511..352 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 17810583..17810714 | 351..220 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:06:21 has no hits.
BO25375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:25:37 Download gff for
BO25375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 63..1328 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:20 Download gff for
BO25375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 71..1336 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:57 Download gff for
BO25375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 71..1336 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:57 Download gff for
BO25375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17809445..17809879 | 851..1284 | 99 | <- | Minus |
| 3L | 17809937..17810276 | 511..850 | 100 | <- | Minus |
| 3L | 17810336..17810494 | 352..510 | 100 | <- | Minus |
| 3L | 17810583..17810713 | 221..351 | 100 | <- | Minus |
| 3L | 17810786..17810989 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:20 Download gff for
BO25375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17802545..17802979 | 851..1284 | 99 | <- | Minus |
| arm_3L | 17803037..17803376 | 511..850 | 100 | <- | Minus |
| arm_3L | 17803436..17803594 | 352..510 | 100 | <- | Minus |
| arm_3L | 17803683..17803813 | 221..351 | 100 | <- | Minus |
| arm_3L | 17803886..17804089 | 17..220 | 100 | | Minus |
BO25375.pep Sequence
Translation from 16 to 1300
> BO25375.pep
MTATKQQEAEAEHDPQVVVTPGDASRSSRQDRGLWRDLTSYWILGLCNNY
GYVVMLSAAHDIIKQFNPNDESEESSSGRNCHLVSTGAILLADVLPSLFV
KILMPFFPFWVNFRIALAVAFSAAGFLLVGFANAEWMALLGVIITSASSG
IGETTFLAYSSRYNKNVISTWSSGTGGAGVIGSLSYASLRSLDFSPRDTM
LIMLIFPAIEAFAFWLLLRRPQVDILPVTTVESTEVLISDEKPLVGFKEK
LFYIKHLFKYMLPLCLVYFFEYFINQGLFELVYFEDIFLDKDSQYRWLNV
DYQIGVFISRSSVNLFQLDKIWLMSIFQFVNVVYFLTEVIWWYTPSIWIV
FAIVLWEGLLGGGAYVNTFYRMSKEISPERQQFAMAMVVQSDSYGIALAG
FLAIPVHNAICGLPAAARSLVWASFLDH
BO25375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-PB | 422 | CG5582-PB | 1..422 | 1..422 | 2191 | 100 | Plus |
| cln3-PA | 422 | CG5582-PA | 1..422 | 1..422 | 2191 | 100 | Plus |
