BO25390.complete Sequence
634 bp assembled on 2010-06-10
GenBank Submission: KX795052
> BO25390.complete
GAAGTTATCAGTCGACATGGAGATGAGTGCTGCCATGTTCGCACGCGTTT
CCTTCTACCCCACCCTGCTGTACAATGTCCTGATGGAAAAGGCATCGGCC
AGGAATTGGTACGATCGCATCGATGAGCATGTGATACTGGGAGCACTGCC
CTTTCGCAGCCAGGCCAATGACCTCATTGAAAAGGAGAACATGAAGGCGG
TGGTGTCGATGAACGAGGACTATGAGCTGACCGCCTTCTCCAACAACACG
GAGAAGTGGCGAAAGCTTGGCATTGAGTTCCTGCAGCTGGCCACCACCGA
CATCTTTGAGTCGCCCAATCAAGAAAAGCTCTTCCGCGGCGTGGAATTCA
TAAACAAGTTCCTGCCTCTAAAGCAAAGAATTGGTGGCCTAAGTTCCTCC
TACCAGCCGGAGAACGTGGGTTCTGTCTATGTGCACTGCAAGGCTGGTAG
GACGCGAAGTGCCACTTTGGTGGGATGCTACCTCATGATGAAGAACGGAT
GGACTCCGGATCAGGCGGTTGACCACATGCGTAAGTGCCGACCGCACATT
CTGCTGCACACCAAACAATGGGATGCCCTCCGGTTATTCTACACAAACAA
TGTGGAGACGAAATCAGCAAGCTTTCTAGACCAT
BO25390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 603 | CG10371-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
| Plip-RA | 585 | CG10371-PA | 1..582 | 35..616 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 901 | CG10371-RB | 171..778 | 9..616 | 3010 | 99.7 | Plus |
| Plip-RA | 878 | CG10371-RA | 168..755 | 29..616 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23758978..23759295 | 173..490 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 23758775..23758918 | 29..172 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 23759357..23759483 | 490..616 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:57:08 has no hits.
BO25390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:23:58 Download gff for
BO25390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 177..776 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:11 Download gff for
BO25390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 179..778 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:25 Download gff for
BO25390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 179..778 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:25 Download gff for
BO25390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23758775..23758918 | 29..172 | 100 | -> | Plus |
| 3R | 23758978..23759295 | 173..490 | 100 | -> | Plus |
| 3R | 23759358..23759483 | 491..618 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:11 Download gff for
BO25390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19584497..19584640 | 29..172 | 100 | -> | Plus |
| arm_3R | 19584700..19585017 | 173..490 | 100 | -> | Plus |
| arm_3R | 19585080..19585205 | 491..618 | 98 | | Plus |
BO25390.pep Sequence
Translation from 16 to 634
> BO25390.pep
MEMSAAMFARVSFYPTLLYNVLMEKASARNWYDRIDEHVILGALPFRSQA
NDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESP
NQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSAT
LVGCYLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLFYTNNVETKS
ASFLDH
BO25390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-PB | 200 | CG10371-PB | 1..200 | 1..200 | 1054 | 100 | Plus |
| Plip-PA | 194 | CG10371-PA | 1..194 | 7..200 | 1027 | 100 | Plus |
