BO25392.complete Sequence
1327 bp assembled on 2010-06-10
GenBank Submission: KX794581
> BO25392.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGTCCACAACACCAACAAACACAAGTTATACAACAAA
TCTTCACACCAGCGCACCCATAGACTCCGAATTCGAAGCTTCCGATATCA
GTGAGGATATAGTGGAAACTCAACCGGAAGAGCAAAAGAACACCATGGAT
CAGCTGCAGCAAATGATGGAACCCCTGCGAGAGGAGATCAGACATGAGGA
AGATTTGGAGCAGGAACACGAGGACAAGGAGTACTTGGAGAGGAAAGAGA
AGAAGGAGCGTGAAGAATTCGATTCCTCAGACGATGAAGACGGCGAGGCT
ACAACTCCTGTTGTGATGAGCGAAACCTTCAATGATGAGTGGGCCGAATT
CGATCAGGATCAGGATCGAGAGCACGATCGGAATGAGGATCAGGATCATG
ATTTGGACTTTGAAAACGATCTAAACAACGAAATCGATATCGAGGAGAAC
TTTGTGCCCATTGACCTATCCAACGATATAGCCGTCAACGATTTGGCTGC
CGCAGATCCCAATTTTCCCATCAATGAAGATGCCGAGTTCATTGTGCACC
CAGCTGTAATCAGAACTATGCCTATGTTCGAGAAGCTTTCTTTAGGAGAG
CCTGCGAAAGCAAGCTTTCTAGACCAT
BO25392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1296 | CG31764-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| vir-1-RA | 1296 | CG31764-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| vir-1-RH | 705 | CG31764-PH | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1849 | CG31764-RB | 243..1535 | 17..1309 | 6465 | 100 | Plus |
| vir-1-RA | 1765 | CG31764-RA | 159..1451 | 17..1309 | 6465 | 100 | Plus |
| vir-1-RH | 1121 | CG31764-RH | 232..930 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12403584..12404179 | 1309..714 | 2980 | 100 | Minus |
| 2L | 23513712 | 2L | 12407185..12407468 | 715..432 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:57:18 has no hits.
BO25392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:00 Download gff for
BO25392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RB | 225..1517 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:16 Download gff for
BO25392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1451 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:29 Download gff for
BO25392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1451 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:29 Download gff for
BO25392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12407185..12407466 | 434..715 | 100 | <- | Minus |
| 2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
| 2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
| 2L | 12403581..12404177 | 716..1311 | 99 | <- | Minus |
| 2L | 12421641..12421704 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:16 Download gff for
BO25392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12403581..12404177 | 716..1311 | 99 | <- | Minus |
| arm_2L | 12407185..12407466 | 434..715 | 100 | <- | Minus |
| arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
| arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
| arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
BO25392.pep Sequence
Translation from 16 to 1327
> BO25392.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKSTTPTNTSYTTNLHTSA
PIDSEFEASDISEDIVETQPEEQKNTMDQLQQMMEPLREEIRHEEDLEQE
HEDKEYLERKEKKEREEFDSSDDEDGEATTPVVMSETFNDEWAEFDQDQD
REHDRNEDQDHDLDFENDLNNEIDIEENFVPIDLSNDIAVNDLAAADPNF
PINEDAEFIVHPAVIRTMPMFEKLSLGEPAKASFLDH
BO25392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-PB | 431 | CG31764-PB | 1..431 | 1..431 | 2261 | 100 | Plus |
| vir-1-PA | 431 | CG31764-PA | 1..431 | 1..431 | 2261 | 100 | Plus |
| vir-1-PG | 423 | CG31764-PG | 1..423 | 1..431 | 2200 | 98.1 | Plus |
| vir-1-PH | 234 | CG31764-PH | 1..233 | 1..233 | 1222 | 100 | Plus |
| vir-1-PC | 234 | CG31764-PC | 1..233 | 1..233 | 1222 | 100 | Plus |
