BO25393.complete Sequence
982 bp assembled on 2010-06-10
GenBank Submission: KX798955
> BO25393.complete
GAAGTTATCAGTCGACATGAAGTGGCTATTAAATGGGCTCCTACTACTAT
TCATCATTTTGATGGTTCATCGGAACCGGGCCGATGAAGATCTTGTAGTA
GCTCCCGGTCCAGACGACGATGGTGAGGGCCTAAATGTTCAGGATAAGGA
TATTTACGATATGTACGAAAACACCCAGATAAATGTCTGCGGCAATGTGG
CGGATGGCGTTTATTTGCCCTATGTTGGAAATTGCTCCAAATATATCGAG
TGTGAAAACAATACTATTAAGGAAGTAGGCAGCTGCTTGGATTTGGCAAA
GGATAATCCAGATATTTGCGATCCGAACAAGTCGTGTGAGCTGGGCTACG
ATCCTGTTCTCCAAGTGTGCACCTACATGGAGGAGGTACAGTGTCTGCCC
ACCTGTGAGTCGTTCCGATTGAGCAGCTTCTGCTACGACAACACCTGTAC
CAAGTACGTGCTTTGCTATTACGGCAAACCCGTGCTACGCCAATGCCACG
ATGGACTCCAGTACAACAACGCCACGGATCGCTGTGACTTCCCCGAGTAT
GTGGACTGTGTGGCCAACGACTGTTCCGCCACCTTCCAGCCAGAGGACAT
CATCTACCTGGGTAGTAAGGCATCATGCAGCAAGTATTACGTCTGTTCCA
ATGGTCATCCGTGGGAACAGCAGTGTGCTCCTGGCTTGGCCTACAATCCC
AGCTGCAAGTGCTGCGACTTTGCCAAGAATGTTAACTGCACGATTGATGC
TGTAGCCAGGAATATTCTGCCATATTCCCGAACCCCTCTGCGTCGTGCTG
ACATTAAGTGTCCCCTTATGGGAACTCACTTCTTCCCACACAAATCTCGC
CGAGATGCATATTATTACTGCGTCGAAGGACGTGGAGTCACACTAGACTG
CACTCCGGGTCTTTACTACGATCCCAAAGTGGAGGATTGCCGCAGACCTG
AATTCGTTGGTGTCGCAAGCTTTCTAGACCAT
BO25393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10154-RB | 951 | CG10154-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG10154-RA | 951 | CG10154-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG10140-RA | 894 | CG10140-PA | 319..490 | 392..563 | 320 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10154-RB | 1023 | CG10154-RB | 41..988 | 17..964 | 4740 | 100 | Plus |
| CG10154-RA | 1165 | CG10154-RA | 41..988 | 17..964 | 4740 | 100 | Plus |
| CG10140-RA | 969 | CG10140-RA | 354..525 | 392..563 | 320 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13436221..13436705 | 742..258 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 13436792..13437031 | 257..18 | 1200 | 100 | Minus |
| 3L | 28110227 | 3L | 13435857..13436079 | 964..742 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 13439823..13439994 | 563..392 | 320 | 79.1 | Minus |
| 3L | 28110227 | 3L | 13438372..13438511 | 428..567 | 190 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:57:24 has no hits.
BO25393.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:02 Download gff for
BO25393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 38..985 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:17 Download gff for
BO25393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 41..988 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:31 Download gff for
BO25393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 41..988 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:31 Download gff for
BO25393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13435855..13436078 | 743..966 | 99 | <- | Minus |
| 3L | 13436221..13436705 | 258..742 | 100 | <- | Minus |
| 3L | 13436792..13437031 | 17..257 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:17 Download gff for
BO25393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13428955..13429178 | 743..966 | 99 | <- | Minus |
| arm_3L | 13429321..13429805 | 258..742 | 100 | <- | Minus |
| arm_3L | 13429892..13430131 | 17..257 | 99 | | Minus |
BO25393.pep Sequence
Translation from 16 to 982
> BO25393.pep
MKWLLNGLLLLFIILMVHRNRADEDLVVAPGPDDDGEGLNVQDKDIYDMY
ENTQINVCGNVADGVYLPYVGNCSKYIECENNTIKEVGSCLDLAKDNPDI
CDPNKSCELGYDPVLQVCTYMEEVQCLPTCESFRLSSFCYDNTCTKYVLC
YYGKPVLRQCHDGLQYNNATDRCDFPEYVDCVANDCSATFQPEDIIYLGS
KASCSKYYVCSNGHPWEQQCAPGLAYNPSCKCCDFAKNVNCTIDAVARNI
LPYSRTPLRRADIKCPLMGTHFFPHKSRRDAYYYCVEGRGVTLDCTPGLY
YDPKVEDCRRPEFVGVASFLDH
BO25393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10154-PB | 316 | CG10154-PB | 1..316 | 1..316 | 1786 | 100 | Plus |
| CG10154-PA | 316 | CG10154-PA | 1..316 | 1..316 | 1786 | 100 | Plus |
| CG10725-PB | 269 | CG10725-PB | 24..268 | 55..315 | 774 | 52.9 | Plus |
| CG10140-PA | 297 | CG10140-PA | 52..297 | 55..316 | 710 | 48.7 | Plus |
| CG33986-PB | 277 | CG33986-PB | 56..259 | 144..309 | 192 | 25 | Plus |
