Clone BO25394 Report

Search the DGRC for BO25394

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:253
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG16787-RA
Protein status:BO25394.pep: Imported from assembly
Sequenced Size:793

Clone Sequence Records

BO25394.complete Sequence

793 bp assembled on 2010-06-10

GenBank Submission: KX796868

> BO25394.complete
GAAGTTATCAGTCGACATGTTGCGAAATTTCGGGATTTCATCAATAAGAA
GGAGCAGCTGGATGGCCAACTGGTGCTCCAAGGAGCGGGCGTGGGCGTCC
GCCATGCGGCTAAGTGCGTCTGCGCCGGCGAAGTGTCCACAAAAGTTGTT
AAACAGCCATGCCGCCAATAACCTCCAGCAAAGTCGAAGGGCCTACGAGA
GCACCAAAGCGGAGAGGCTGCCCGGGAACCCTAAGGAGAACGAGCGTAAG
CCCGAGGACCTGGATAGAGCCTACGAGGTTCTGAGGACCACGCTACCAAA
GCTGTTCGTGGAGCCCCTAGACTACTCCATTTACAGCCCGGGCCTAATCT
TCCACAACAACATAACGGGCAAGCACACGGTGGGCCTGTACCACTACGTC
AAACAGATCGCCATCCTGCGAACGGTTGGCCACCTGAAGTACGCCTACGT
GAAATTCGAGGTGCTCAAGATCACGAAGCACCAGGACGACTACACAGTGC
GGATAAGGTGGCGAGTGCGCGGCATTTCCGGCCTGAAGGTCATGTTCCAG
TTCTGGAAGTACAAGCTCTGGCAACTGAAGGAGGTGCTGAAGGATCAGGA
GGCCTGGTACGACGGCTACTCTGTCTGCTATCTGGGCGACGATGGGCTGA
TCGTCAAGCACGTCGTGGACAAAGTGATGCCGGACGAGAGTCGGGAGGCG
GTTGAGAACCCTTCTGCGACGGCACTACCTCCCGGATCCTTGGCAGCGAC
CTCTTCCCAGAAGATCAACTGCCAAGCAAGCTTTCTAGACCAT

BO25394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG16787-RA 762 CG16787-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16787-RA 1071 CG16787-RA 224..982 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23956424..23957182 775..17 3795 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:57:30 has no hits.

BO25394.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:03 Download gff for BO25394.complete
Subject Subject Range Query Range Percent Splice Strand
CG16787-RA 227..980 22..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:19 Download gff for BO25394.complete
Subject Subject Range Query Range Percent Splice Strand
CG16787-RA 229..982 22..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:32 Download gff for BO25394.complete
Subject Subject Range Query Range Percent Splice Strand
CG16787-RA 229..982 22..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:32 Download gff for BO25394.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23956421..23957177 22..777 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:19 Download gff for BO25394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19843944..19844700 22..777 99   Minus

BO25394.pep Sequence

Translation from 16 to 793

> BO25394.pep
MLRNFGISSIRRSSWMANWCSKERAWASAMRLSASAPAKCPQKLLNSHAA
NNLQQSRRAYESTKAERLPGNPKENERKPEDLDRAYEVLRTTLPKLFVEP
LDYSIYSPGLIFHNNITGKHTVGLYHYVKQIAILRTVGHLKYAYVKFEVL
KITKHQDDYTVRIRWRVRGISGLKVMFQFWKYKLWQLKEVLKDQEAWYDG
YSVCYLGDDGLIVKHVVDKVMPDESREAVENPSATALPPGSLAATSSQKI
NCQASFLDH

BO25394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16787-PA 253 CG16787-PA 1..253 1..253 1341 100 Plus