BO25410.complete Sequence
1927 bp assembled on 2010-07-15
GenBank Submission: KX794157
> BO25410.complete
GAAGTTATCAGTCGACATGAGCACCTGGAATCCGGAGAACGATGTGGACC
TGCTGTCTGGGTCCGAGGACGAGGAGGATGTGTCCATGAAGCGGGACTAC
CATGGGCGCGAGGCCATTCTGTTCGTGGTAGACGCCAATCTTCAGACAGC
CGGCGTGGAGCGCCTGTTGGAGGCACTGAACATCATCCGGACGGCCTTTA
TATCCGGACTTCTGGTTAACGACAAGGACCTCATCGGACTCATCTTCGCC
AACACCAAGCACAGTCCGCCGCCGCTGGAAGCCAGTGCATTGGACAACAT
CGTAATGCCGGATAACTGCGCAGTGTTCTTGCCCCTTCGCCAACTAACCA
AACCCATTGTGGAGCACTATCTGGAATTCATGGGCGGGGTGGAGACGCAG
TTCGCCGATGTGTATGGCCTGGCGGAACCCGATGGTCGCGGCAGGTTTGA
CCTTATGATCCGGCTCTGCATCGAGATGCTGGAAAAGTGCGGCAAGAAGC
TAAACAACGCCAAGATCGCCTATGTCACGGACGTCAGGGAACCTCATCCA
TCGAACAGCAATCACTTCCAGGCTGCCCTGCAAAAGGCCAGCGATCTGGA
GGGCAAGGAGTTCGAGTTTCATGTCATTCCCATGGTCGATGACTTTGACT
ACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGCTATCGAACTG
GACGCCTTCCAGGTGCCAGATGCCCAGATGCTGCGCGAAATCCTGTCCGA
TCGTAAGTTGAAGCAGGATTTCCTTCGCCGATGCCTGGGCCACTTCAGTT
TTTATCTGGGCCCCAACCTATCCATGTCCGTACAGTACTACAATTACTTT
CAGCGACGCGCCTATCCGCGCAAAGTGCAAATCCTGCGCAGGGACAACAG
TGTGGTGCGTACTAAGCGAGTGATTACGGTGCAAAAACAAAAGGACGATG
GCTCGCAGGATATCGAGCACGAGTATCAGATTAAGGTGACGGGCGGTTGG
TACACTTGCAACGTGGGCGAAAGGGATCTGCGCATCAGCATGGATCAGTT
GAACAGGGTGCGCAATCTGCACAAGCCGCAAATGATGCTGCTGGGCTTCA
AGCATCGATCCTCTCTTCCCGAAGTTAGCTACATCAAGCCAGCGAATTTC
ATGTACCCCGATGATCAGAGCATCATCGGATCGAAGCGCTTGTTCCGCGC
ATTGTGGGAACGATGCTTGGTGCGCGACAAGATTGCCATTTGCCTGTTCA
TGTGCAAGCGCAAGTCGATACCTCGCTATGTGGCACTTGTGCCAGTAGAG
GCCCCAGATAATGGGGAAGATAAGAACTATCGCTCTCTGCTCTGCGGTGA
CGGATTCAAGATTGTCTACTTGCCGGAGGCCAAGCACATCCGCCACCTAG
ACTTGCAGGACTGGAACAATACGGAAAACACTGCTGACGAACAGAAAGTC
GAGTTTTTCCAAAAGATCATCAAGAAGCTGCGCGTTGACTATCAGCCGAA
TCTCATCAACGATCCAAGTCTGGACGCCCTGCAGGCGAATCTTCTGGCCC
TCTCCCTGGACTTTTCGACAGATACTAAAGGACTCGATAATCTGCTGGAC
ACTTCGCAACAGGACAAGCGCATAGAAAAGCTGCTGCCGGACTATGAAAT
GTTCGCTCCGGAAGCAGAACCCCATAAGAAGCGAGCAGCCAAGTCCACCA
CAGCGGGAGCGAGCGGTCCCAAAATGGCCAAGATCGATGATGATCAACTC
AAGGAATTCGAATTCGTAAAGAGCCTGAACAAGGATGAGGCTCTGACGAG
TTGCACGGCCGCCCAGTTGCATTTTATTCTGCAGCATCACTTCGATGTTA
CAATGCCCAAGTCGTCAAAGAAGGCAAAACTGGTCGCCAAAATCGAGGAA
CTACATAAGGCAAGCTTTCTAGACCAT
BO25410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irbp-RA | 1896 | CG5247-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
| Irbp-RB | 798 | CG5247-PB | 1..736 | 17..752 | 3680 | 100 | Plus |
| Irbp-RB | 798 | CG5247-PB | 737..798 | 854..915 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irbp-RA | 2149 | CG5247-RA | 92..1984 | 17..1909 | 9465 | 100 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 828..1883 | 854..1909 | 5280 | 100 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 92..827 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11411054..11412275 | 688..1909 | 6110 | 100 | Plus |
| 3R | 32079331 | 3R | 11410138..11410810 | 17..689 | 3365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:45:09 has no hits.
BO25410.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:26 Download gff for
BO25410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 90..1982 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:08 Download gff for
BO25410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 92..1984 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:11 Download gff for
BO25410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 92..1984 | 17..1911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:11 Download gff for
BO25410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11410138..11410810 | 17..689 | 100 | -> | Plus |
| 3R | 11411056..11412275 | 690..1911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:08 Download gff for
BO25410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7235860..7236532 | 17..689 | 100 | -> | Plus |
| arm_3R | 7236778..7237997 | 690..1911 | 99 | | Plus |
BO25410.pep Sequence
Translation from 16 to 1927
> BO25410.pep
MSTWNPENDVDLLSGSEDEEDVSMKRDYHGREAILFVVDANLQTAGVERL
LEALNIIRTAFISGLLVNDKDLIGLIFANTKHSPPPLEASALDNIVMPDN
CAVFLPLRQLTKPIVEHYLEFMGGVETQFADVYGLAEPDGRGRFDLMIRL
CIEMLEKCGKKLNNAKIAYVTDVREPHPSNSNHFQAALQKASDLEGKEFE
FHVIPMVDDFDYEPFYKEFITLSRAIELDAFQVPDAQMLREILSDRKLKQ
DFLRRCLGHFSFYLGPNLSMSVQYYNYFQRRAYPRKVQILRRDNSVVRTK
RVITVQKQKDDGSQDIEHEYQIKVTGGWYTCNVGERDLRISMDQLNRVRN
LHKPQMMLLGFKHRSSLPEVSYIKPANFMYPDDQSIIGSKRLFRALWERC
LVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSLLCGDGFKIV
YLPEAKHIRHLDLQDWNNTENTADEQKVEFFQKIIKKLRVDYQPNLINDP
SLDALQANLLALSLDFSTDTKGLDNLLDTSQQDKRIEKLLPDYEMFAPEA
EPHKKRAAKSTTAGASGPKMAKIDDDQLKEFEFVKSLNKDEALTSCTAAQ
LHFILQHHFDVTMPKSSKKAKLVAKIEELHKASFLDH
BO25410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irbp-PA | 631 | CG5247-PA | 1..631 | 1..631 | 3289 | 100 | Plus |
| Irbp-PB | 265 | CG5247-PB | 1..245 | 1..245 | 1268 | 100 | Plus |
