BO25411.complete Sequence
1327 bp assembled on 2010-06-10
GenBank Submission: KX798571
> BO25411.complete
GAAGTTATCAGTCGACATGATTTCTCGCCGCAAGATCATATCGCGCTCCC
TAGACAATTTGGATGCCATCGGGCAGGAAGAGCAGGAGGAAGACGTCTGG
CACGATCGCGAAAAGCTCTTCAGGGATCACATCAACGAGGTTCTGTCCAA
GTGGGAGCAAATCGACGACGAGATCTGGGCCAAGATAATTGTCTTCGAGA
AAAATCGGCGAGTGGCCAAGGCCTACGCCCGCTCCTCTGTGATAACCATA
AATGGATCTAAGAATGGATTCGATGGAGTGCGTATTGGGCTGAATGGCTT
CGATAATCCGATGCGCGATGCGGAGACGAAGGTGATCAAAAAGTCCATCG
GCGATGGATTCAAGATCAAAATGGACGACACCGGCAACATATTCATCAAG
CGGTATGGCAAGAGCAGCATCTACGTGAACAGCACATCGCAGGGCAACGA
GGAGACGGTGATCGGTGGCGACATAATCCAAATGCCGCAGATGTCCCTCA
CCGCGGCCACCTCCGCTCGACTCTTTGATATGAAGAAGTTCCAGACGAAC
ATAAACCGCGAGTTTGCCCGCACTTATCCGGAGCGCGGAAGACTGGAACG
GCAGTGCCTGTCCGCCGTATCGCTTGTCAAGTCGAACAACAATCTTATCA
ACTCTCCGGTCTGGATACTCGTGGTCAACGTGGTGGCCATGGACATGCTG
AGGAGCCGCCTCCAAACGATTCCCAAGTCACTGGATGCGATGGGCATGCG
AGTGCCGCTGACGAACAGCAGCGAGGATCCATACTCCACCATCGAAAGCC
AAGTGGGATTGATCTATCCTACGCCCGCCGCGTCGGATGATTCCCAGAAC
TCCCAGCACTCGAGCAACTCCAGCAAGGGACGGCGCAGCATCTTTAGTGC
CGCCTTCCTCAACGAGGGTCCATATGTGCCCAAGCCCGACTACGAATCTG
GCGGATCTTTGACGCCCATATATGCGGACAAGAAGCGACAGAAGAGCAGC
GGGTCGCAGCAGCGGAAGAAGCAGGATGATCCGTACTACTGCGGACTCTT
GGCGCGTATTCCCAACTTCATCAAGTCCTCGAAGCAGCCGTGCCCTGGAG
GAGCCAGCAAGCCCAAGAAGGAGCCAAAGATCTCGCGGAAGATCTCGGCA
CAGCACCAGCAACAGCAGTTCCTGCAGCCGGCGCAACCCATTCCCATTGC
CACATTCCACCACTCGTACTTCCCCTACAAACTGTATCCACCGCAGCACC
GTCTCTCCCAGTCGCAAATGTCCCTCTGGGATGCACGTAGTCTGATCAGC
GCACATGAAGCAAGCTTTCTAGACCAT
BO25411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13183-RA | 1296 | CG13183-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| CG13188-RB | 1542 | CG13188-PB | 151..422 | 158..429 | 325 | 74.6 | Plus |
| CG13188-RA | 3078 | CG13188-PA | 151..422 | 158..429 | 325 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13183-RA | 2211 | CG13183-RA | 399..1691 | 17..1309 | 6465 | 100 | Plus |
| CG13188-RB | 2842 | CG13188-RB | 857..1128 | 158..429 | 325 | 74.6 | Plus |
| CG13188-RA | 4532 | CG13188-RA | 857..1128 | 158..429 | 325 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11905395..11906047 | 934..282 | 3265 | 100 | Minus |
| 2R | 25286936 | 2R | 11904906..11905280 | 1307..933 | 1875 | 100 | Minus |
| 2R | 25286936 | 2R | 11906109..11906267 | 282..124 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 11906339..11906447 | 125..17 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 11955618..11955718 | 158..258 | 235 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:03:00 has no hits.
BO25411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:49 Download gff for
BO25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 395..1687 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:51 Download gff for
BO25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 399..1691 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:32 Download gff for
BO25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13183-RA | 399..1691 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:32 Download gff for
BO25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11906109..11906266 | 125..282 | 100 | <- | Minus |
| 2R | 11906340..11906447 | 17..124 | 100 | | Minus |
| 2R | 11904900..11905278 | 935..1311 | 99 | <- | Minus |
| 2R | 11905395..11906046 | 283..934 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:51 Download gff for
BO25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7792405..7792783 | 935..1311 | 99 | <- | Minus |
| arm_2R | 7792900..7793551 | 283..934 | 100 | <- | Minus |
| arm_2R | 7793614..7793771 | 125..282 | 100 | <- | Minus |
| arm_2R | 7793845..7793952 | 17..124 | 100 | | Minus |
BO25411.pep Sequence
Translation from 16 to 1327
> BO25411.pep
MISRRKIISRSLDNLDAIGQEEQEEDVWHDREKLFRDHINEVLSKWEQID
DEIWAKIIVFEKNRRVAKAYARSSVITINGSKNGFDGVRIGLNGFDNPMR
DAETKVIKKSIGDGFKIKMDDTGNIFIKRYGKSSIYVNSTSQGNEETVIG
GDIIQMPQMSLTAATSARLFDMKKFQTNINREFARTYPERGRLERQCLSA
VSLVKSNNNLINSPVWILVVNVVAMDMLRSRLQTIPKSLDAMGMRVPLTN
SSEDPYSTIESQVGLIYPTPAASDDSQNSQHSSNSSKGRRSIFSAAFLNE
GPYVPKPDYESGGSLTPIYADKKRQKSSGSQQRKKQDDPYYCGLLARIPN
FIKSSKQPCPGGASKPKKEPKISRKISAQHQQQQFLQPAQPIPIATFHHS
YFPYKLYPPQHRLSQSQMSLWDARSLISAHEASFLDH
BO25411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13183-PA | 431 | CG13183-PA | 1..431 | 1..431 | 2230 | 100 | Plus |
| CG13188-PB | 513 | CG13188-PB | 1..483 | 1..436 | 916 | 42.7 | Plus |
| CG13188-PA | 1025 | CG13188-PA | 1..472 | 1..425 | 913 | 43.5 | Plus |
