Clone BO25419 Report

Search the DGRC for BO25419

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:254
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG13305-RC
Protein status:BO25419.pep: Imported from assembly
Sequenced Size:643

Clone Sequence Records

BO25419.complete Sequence

643 bp assembled on 2010-06-10

GenBank Submission: KX796801

> BO25419.complete
GAAGTTATCAGTCGACATGGATCTGCCAATTGGAAAGTTAAACGGACTGC
TAAAGATGCAAATATTCCTCCTGCAATTGTTGCTTTTCGTTTCGCCGGCA
TTGTTGCAGCAGCCACATGTCTTTTACCATCCAAGACAATTGTATTACGA
TTCACCGCGTCTTCGTCGCTTTGAGTATGGTGCCGCTGCCACGCCCATTG
TGGGCGGCTATAGTCCGGCTCCTCCGCCGGCGATTCACTTTCAGCAGCAG
ACGCCACACTTTCAGCTGATTAACTATCGGCCGAGTTATCAGCCCTTGGG
CTTGGATTACCAGCAGCAGCAGTTGCCCGCTCCTGCCGCACCCCCTCCGC
CCCTGTATCCGCAGCAGAGTGTCCAGTACCAGCAGCGGACCATCGCTCCA
CACGCCGATTTGGCCAAATATCGATATGAAGATTGCAGGAGCAGCAGCAG
CAGCAACCCTCACAGAATGTCCAAACGGAAAGACCCAGGAGGTACGCCAA
GGATCTGGACACGGATGTGGCCGAAACCAGAAGTCCAGCTGACCGAAGTG
CCAAGGAAACCAAGTACTTTCATGACATTTTCATGCGCTTTGATGCACCC
GATTCGCGGAGTCATGGCCACGTCCGCAAGCTTTCTAGACCAT

BO25419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13305-RC 612 CG13305-PC 1..609 17..625 3045 100 Plus
CG13305-RB 972 CG13305-PB 1..415 17..431 2075 100 Plus
CG13305-RB 972 CG13305-PB 640..835 430..625 980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13305-RC 1138 CG13305-RC 293..901 17..625 3045 100 Plus
CG13305-RB 1364 CG13305-RB 293..707 17..431 2075 100 Plus
CG13305-RB 1364 CG13305-RB 932..1127 430..625 980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8646116..8646530 431..17 2075 100 Minus
3L 28110227 3L 8645749..8645891 572..430 715 100 Minus
3L 28110227 3L 8645236..8645288 625..573 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:03:36 has no hits.

BO25419.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-10 21:24:56 Download gff for BO25419.complete
Subject Subject Range Query Range Percent Splice Strand
CG13305-RC 289..897 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:05 Download gff for BO25419.complete
Subject Subject Range Query Range Percent Splice Strand
CG13305-RC 293..901 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:42 Download gff for BO25419.complete
Subject Subject Range Query Range Percent Splice Strand
CG13305-RC 293..901 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:42 Download gff for BO25419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8645233..8645288 573..627 96 <- Minus
3L 8645749..8645889 432..572 100 <- Minus
3L 8646116..8646530 17..431 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:05 Download gff for BO25419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8638333..8638388 573..627 96 <- Minus
arm_3L 8638849..8638989 432..572 100 <- Minus
arm_3L 8639216..8639630 17..431 100   Minus

BO25419.pep Sequence

Translation from 16 to 643

> BO25419.pep
MDLPIGKLNGLLKMQIFLLQLLLFVSPALLQQPHVFYHPRQLYYDSPRLR
RFEYGAAATPIVGGYSPAPPPAIHFQQQTPHFQLINYRPSYQPLGLDYQQ
QQLPAPAAPPPPLYPQQSVQYQQRTIAPHADLAKYRYEDCRSSSSSNPHR
MSKRKDPGGTPRIWTRMWPKPEVQLTEVPRKPSTFMTFSCALMHPIRGVM
ATSASFLDH

BO25419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13305-PC 203 CG13305-PC 1..203 1..203 1100 100 Plus
CG13305-PB 323 CG13305-PB 1..138 1..138 743 100 Plus