BO25488.complete Sequence
1750 bp assembled on 2010-06-16
GenBank Submission: KX796476
> BO25488.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCGACTGCGTCTGGTCAAGCTGC
TGCTGCTCGGATTTCTGCTGGCCAATCTGGTGTTTCTCTATTACACGTGG
AACACGCTGCTCTGGCGGCGGATAAGTAGGGCTCTGTCCGGTGAATCTCA
GCCGGCAGAGGAACCGCCAAAGGCCGCCAAGCTGTCGCCCAAGGAGAAGC
TGCGCAATGCCAACAAACACATACGCAAGTCCATCACCATCGTGTTCTAT
GGCCACTACAACTTTGAGCAGGATCTGAAGGCATCGATCGACAGCATCCT
GGACGTGATACCCAACATGCCCATCCTGGTGCTTCAGGATGGCGGTGCCG
AGTACGCCTATCCGCCGGTCAACTACGAACGGAACCTAACCGCCGGCGAG
GAGCGCACCGTGCTATTCCAGAGTCTGTCCTTCGATGTGCGGCGAACGCG
GCAGGAGCTGAATCCCTTGGCGTCCATTCGGACCAAATACGCTCTCATCA
TGCCGGACGGCGTGCGGCTGAACAGCAAGAACATCCTGCAGAAGATTCTG
CGCGAGATCAACTCCATGGGCCTGCCGGGTCAGCCCAAGGAGCAGCGACC
TCCAGTGCCGCCGGAGCAGTTGGTGCGACGCATGGTGCTAGTACCCTTCG
CCGGCAATCTGAAGTCCTTCAGCAGCTGCGTCAAGATGAACCTGGATTTG
CCCGACTGGACACTGGAGCTGGTGGCAACCAACGATACGAGACGATGTGA
TTTGTTCCTGCAGAAGCACGCAATCCTGTTGGATGCAGCTGCTCTGGCAG
CCATGCCCGAGCCCTTCTCCCTGCCCTTTCCGGAAATGCTCTACATGCAG
GCCAAGATAGCCAATCTCTCGACCACGGTGTTCCCGCAAGCCTTTCAAGA
GGGACGGCGTCTATTCGCCTCCTTTCACACCAAACAGCGGAGGATGGACC
TGCGCCGTCGGCAGTTCCGTGAGATGTACAAGAAACTGCAGATCAAGCGG
ATCGTGAGAAGGGCATACAGAGTGCCAGGAAAGGCTCAGGCCCGGGAGGT
TTGGGGTCAGGGTCACGGCTTGGTCCTGGATGGTCAGTTCTCGTCCTCGA
ACACCTCGCTGCCCCTGATCACCGACATCGATCTGTTCGGCTGCGAGCGG
ACCACCAAGTCCTGCATAGGCAGTGTCTATAACGAGAGACCGTACTACTC
CTACCTGGGCAAGCATACGCCACCGTGCTGCCTGGACAAGCTGAGGACGA
CCTTCAACCATGTGCTGGAGGAGTTCGAGAACGTGGGCATACGCTACTGG
CTGGACAACCGAGCCCTGCAGAGCGCCATCGAAACCAATCACCTGTCTCC
GGATGCCTACGACATCGACATTAGCTTCAATGTCCAGGACCTGGAGCGAT
CCAATGCGATGAAGAAGTCGCAGAGCAAGCCCTATGTGGACAACGAGGGT
TTCTATTGGATTAAGGCCACCGATGGCCATCATTTCCGCGTCCAGTTCTC
AAAGCCCAACCAGGTGGGCGTCAACCTACTGCCCTATTCCATCAGTGGAA
CGGAGGCGAAGGCCAGTGGCTTCTTCGGCTGGAAGGCCAGAAGCTTCTCG
GCGGACTACCTGCATCCGATGTCCACGGTGCTCTTTCTGGGCAAGAGCGT
TATGTGCCCAAACAATGTACTGGAGTATCTGGAGGAGAAGCGCATCCGGG
TGAAGTCCGCCGACTTGGATGCGGATGAGGATGCAAGCTTTCTAGACCAT
BO25488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15651-RA | 1719 | CG15651-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15651-RA | 2547 | CG15651-RA | 294..2014 | 12..1732 | 8590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20984371..20985232 | 1732..871 | 4310 | 100 | Minus |
| 2R | 25286936 | 2R | 20985465..20986207 | 754..12 | 3700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20985289..20985406 | 871..754 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:44:19 has no hits.
BO25488.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-16 15:01:51 Download gff for
BO25488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 294..2009 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:16 Download gff for
BO25488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 299..2014 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:58 Download gff for
BO25488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 299..2014 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:58 Download gff for
BO25488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20984368..20985231 | 872..1734 | 99 | <- | Minus |
| 2R | 20985289..20985405 | 755..871 | 100 | <- | Minus |
| 2R | 20985465..20986202 | 17..754 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:16 Download gff for
BO25488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16871873..16872736 | 872..1734 | 99 | <- | Minus |
| arm_2R | 16872794..16872910 | 755..871 | 100 | <- | Minus |
| arm_2R | 16872970..16873707 | 17..754 | 100 | | Minus |
BO25488.pep Sequence
Translation from 16 to 1750
> BO25488.pep
MKVFRLRLVKLLLLGFLLANLVFLYYTWNTLLWRRISRALSGESQPAEEP
PKAAKLSPKEKLRNANKHIRKSITIVFYGHYNFEQDLKASIDSILDVIPN
MPILVLQDGGAEYAYPPVNYERNLTAGEERTVLFQSLSFDVRRTRQELNP
LASIRTKYALIMPDGVRLNSKNILQKILREINSMGLPGQPKEQRPPVPPE
QLVRRMVLVPFAGNLKSFSSCVKMNLDLPDWTLELVATNDTRRCDLFLQK
HAILLDAAALAAMPEPFSLPFPEMLYMQAKIANLSTTVFPQAFQEGRRLF
ASFHTKQRRMDLRRRQFREMYKKLQIKRIVRRAYRVPGKAQAREVWGQGH
GLVLDGQFSSSNTSLPLITDIDLFGCERTTKSCIGSVYNERPYYSYLGKH
TPPCCLDKLRTTFNHVLEEFENVGIRYWLDNRALQSAIETNHLSPDAYDI
DISFNVQDLERSNAMKKSQSKPYVDNEGFYWIKATDGHHFRVQFSKPNQV
GVNLLPYSISGTEAKASGFFGWKARSFSADYLHPMSTVLFLGKSVMCPNN
VLEYLEEKRIRVKSADLDADEDASFLDH
BO25488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15651-PA | 572 | CG15651-PA | 1..572 | 1..572 | 2982 | 100 | Plus |
