BO25501.complete Sequence
2815 bp assembled on 2010-07-15
GenBank Submission: KX794137
> BO25501.complete
GAAGTTATCAGTCGACATGGCTTGGAAACAGAAAAATAAACTCCTTTTTG
ACACTTGTAAAAACCAGTTAAGCTGTGGCGCCGTAAACGCCAGATCCTCG
ATGATGCAGTCCATCCAGTCTAGGATCAACGTGCTTAACACCATTGCTGC
TTCCAGCAAGCGGATTGAACGCGCCAGCGTTGACACGGACACCCACGATG
CGGACGCCAACTGCGACGGGCCCGACCTGGACTTCGTGTACGCGGACGTG
GATGGCTATCAGAACGAGATCGCTGAACTGTATAGCTACACGGAGTTCAG
CGAGTTTCAGATGAACGTGAAGGCCTTCGAGGACCAGATGGAGCTGTACG
ACCTGCCGCCCAACTGGCAGAAGCAGGACTCCGCCTCCCAGCGCGGCATC
GTGATGAAGCTGGTGGACCAGCTGGAGGTCTCCGATCGATCCTTTCGCAT
GCAGGCCGCCCGGTGCATCCTTTACCTGGCCCAAGGCTGCTGGGCGGAGG
TTCAGTCGGACGAGGAGCAGCACCAGATCACCAGGGACAATGTGCTGGTG
CTCTACCAACTCGGCGTCTTCGCCTCCTTCATCGACCTGCTCAACATGGA
GATCGAAAGCGCCTGCTCTCCGGACATTGTGGCCGTCAAGATCACTAACG
TCACGCTTGTGGACTCCACGGACATTCGGGTGATCCTATCTGTGCTCTAC
ATCATCACAGAAACGATTCGCGATGAAAAGGAAAAGGGCAGCGAAGACTA
CAGAGAGCTGGCCGACTCCTTTGTGCAAGAAATCAACTCACCACTACCAG
ATGGCGAACTTCTGGCCGTCAAGCTGTTGGGCATGATCACACGGTTTTGC
AGTGGCGCAGCACCGCAGTTCCCCATGAAGAAGGTTGTCCTCCTGCTGTG
GAAAGTTTCGCTGCTGGGACTGGGAGGCATGGATGTGCTCAAGAATCTCA
AGAACGAGTATCGATTGAAGGTGGGTTTGGAACCCATCACCGAGGACACG
CTGGAGGTTACCAAGTGCATGCGAGCCAGCTCACCGCCGGCCACAGCTAC
TGATATACTGGAGAACCAGTATCCCAAGCGGAACTTCAAACGCTCCCTGA
TGAAGCAGCGTTTTTTGGACGAGCCCGAGCAGATAGACATGGAGATGGGC
GGCAACGAGGGTCAAAATAATGCCAACAATGGCAGCGGCAATGGCGGAAA
CGGGGAGGAGGAACTCTCTCAGTACTACAGACCCTACGATGACCCCTCTT
CGTCCGCATCCACCACCTCGACGGCAAATCCAAACAACCAGCCTAGCCTA
ACACAGCCACCCGCTGCTGTGCCTCCGGTACAGATCACGGCTCGCCTGCC
CTGGACGCCCAAGGTGCGACAAAAGGACATTGACCAGTTTCTGGACATTT
CGCGGAATAAGTTCATCGGGTATTCGCTGATTGGTGACCACGAGAGTCTG
GCTGGACTGCCGCAACCCATTCACGAGGGCTTTAAGACGCTGCAGCGGCA
CATGTATATGAGCCTGGCCGATGTGCAAATCAAGAAGGAGGAGGACATAG
CTAGGAACCCCATTTCCACACACGAAGACGAAATCAAACTGACCCCGGCT
GAGGTGTTGTACCAAGCCATCCTGCCAAACCTGCCGCAGTATATGATCGC
CCTCCTTAAGGTCCTGCTGGCAGCTTCGCCAACGTCCAAGTCCAAGACGG
AGAGCATTAACATAATGGCCGATGTGCTGCCTAGGAAGATGCCGCTGACG
GCCACCCAATCAACAAAGCTAACCGTCGACATTGGTCGGCACAAGGAGAT
CATTGTGAAGGCTGTCTCGGCCATCATCCTGCTATATTTAAAGCATTTCA
AGATAAACCATGTTTACCAGTTTGAGTTCATGTCGCAGCATCTCGTGTTC
GCCAACTGCATCCCGCTGGTTTTGAAGTTCTTCAATCAGACAATCACGGA
GTACGTGAACACCAAGAACTCCATTCCTCTGCTCGATTTCCCGTCGTGTG
TGATTGGTGAGCAACCGGATTTGAGTGGCGATAGCTTTGTGTATGGCGGA
GAGATGTCCGATAAGTCCTACTCTTGGCGGAACGTGTTCTCCTGCATAAA
CCTGCTGCGCATCCTCAACAAGCTGATCAAGTGGAAGCACTCGCGAGTGA
TGATGCTGGTGGTATTCAAGTCGGCACCAATCCTGAAGAAGACGCTTAAG
GTGCGCCACGCCATGATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCA
GACCAAGTACTTGGGCCGCCAGTGGCGGAAGTCCAATATGAAGACCATGA
GTGCAATTTACGCCAAGGTGCGGCATCGTCTAAACGACGATTGGGCCTTT
GGCAACGACTTGGAGTCGCGTCCCTGGGACTTCCAGGCGGAGGAGTGTAC
GCTGCGGGCCTGCGTGGATCGATTCAACCTGCGACGCTATCCGGAAGCCA
CCCAGAAGTGTGGAAACAACGGCACGGCAGCTCAGAATGCGGAGAACGCC
CAGCAATCCAACATGATGGCGGGCAACAATGGATGTGGCAATAATGGCGA
CGCAAATGGCTATGGAAACAACGGTGGCGGTGGCAATGGCGGCCACAACC
AGCAGCAGCAGCTCAACGACTATGGTGTGGAGGGTGGCTTTCCCAGCGAC
GAGATCCTTACCCACTCGGACTTTGCCTTCTTCGGTCACTCGGGTTGGTG
GGATCGCAAGGTCGAGCTGACGGATTACTTCAAGGCCAATTACGCGGTCT
GGCTGGAGGAGGAGGTCTACAACAGTCAGACCGACTGGGACGCCCTCGCA
AGCTTTCTAGACCAT
BO25501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RB | 2784 | CG11526-PB | 1..2781 | 17..2797 | 13740 | 99.6 | Plus |
| Strip-RC | 2649 | CG11526-PC | 36..2646 | 187..2797 | 12890 | 99.6 | Plus |
| Strip-RA | 2649 | CG11526-PA | 36..2646 | 187..2797 | 12890 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RB | 3161 | CG11526-RB | 3..2783 | 17..2797 | 13740 | 99.6 | Plus |
| Strip-RC | 3792 | CG11526-RC | 345..2955 | 187..2797 | 12890 | 99.6 | Plus |
| Strip-RA | 3596 | CG11526-RA | 608..3218 | 187..2797 | 12890 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3322929..3324636 | 2797..1090 | 8375 | 99.4 | Minus |
| 3L | 28110227 | 3L | 3324700..3325602 | 1089..187 | 4515 | 100 | Minus |
| 3L | 28110227 | 3L | 3328698..3328869 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:55:24 has no hits.
BO25501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:37 Download gff for
BO25501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RB | 3..2783 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:09 Download gff for
BO25501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RB | 3..2783 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:04 Download gff for
BO25501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strip-RB | 3..2783 | 17..2799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:04 Download gff for
BO25501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3322927..3324636 | 1090..2799 | 99 | <- | Minus |
| 3L | 3324700..3325601 | 188..1089 | 100 | <- | Minus |
| 3L | 3328699..3328869 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:09 Download gff for
BO25501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3322927..3324636 | 1090..2799 | 99 | <- | Minus |
| arm_3L | 3324700..3325601 | 188..1089 | 100 | <- | Minus |
| arm_3L | 3328699..3328869 | 17..187 | 100 | | Minus |
BO25501.pep Sequence
Translation from 16 to 2815
> BO25501.pep
MAWKQKNKLLFDTCKNQLSCGAVNARSSMMQSIQSRINVLNTIAASSKRI
ERASVDTDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFSEFQMN
VKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRMQAARC
ILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNMEIESAC
SPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDYRELAD
SFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLWKVSLL
GLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATATDILEN
QYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGNGEEEL
SQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLPWTPKV
RQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRHMYMSL
ADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIALLKVL
LAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEIIVKAV
SAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITEYVNTK
NSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCINLLRIL
NKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQTKYLG
RQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECTLRACV
DRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYG
NNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWWDRKVE
LTDYFKANYAVWLEEEVYNSQTDWDALASFLDH
BO25501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-PB | 927 | CG11526-PB | 1..927 | 1..927 | 4849 | 100 | Plus |
| Strip-PC | 882 | CG11526-PC | 9..882 | 54..927 | 4570 | 99.7 | Plus |
| Strip-PA | 882 | CG11526-PA | 9..882 | 54..927 | 4570 | 99.7 | Plus |
