BO25516.complete Sequence
1060 bp assembled on 2010-06-28
GenBank Submission: KX798582
> BO25516.complete
GAAGTTATCAGTCGACATGCTGCTGCCCCCGTACCAAGAAGCCTGCAATC
CCGGCTTCTGTGATTGCCCGTTTCCCAACTCCATTGAGGTTACCAACCAC
AAGGGCCATATACCCGACCTGGTCAGGTGCCAATGCGGCGAGGATGAGTC
CGGAAACGTGAATGCCTGGCGGTGGCACGCCACTGATGAATCGGATGCCG
TGGTCACCGACCGGGACATCATCTTCCATCCCACCTACAGTCAGGGCACG
GCGATTGTGAGAGGGGAACAGGCCCTAAAAACAAACATGGTGCACTTTTG
GGAGATGCGCGTCATCACGACTCTGGCCGGCACGGATGTGATGTTCGGCA
TCGGCACGGAAAGCGTTAATCTAGGGCAGTTCAAGTTTCACTTTGTCTCG
GCCCTGGGCACCAATGCCCAGTCCTGGGGCTTTTCGTATTCCGGAAGGAT
TCAGCACTGTGGCGAGTTACTGCCCTACGGCCAGAAGTTCTCGCAGGGCT
GCTTGATTGGTGTCTGTTTGGATCGAACGCGTGGGCACTTGGAGTTCTAT
TTGAACCGCAGATCGCTGGGAGTGGCCTACACCAATGTCCCGACGGATCC
GGATGTCAAAATATATCCCATGGTCTGCTCCACAGCCGCGAAGTCCGTAA
TTAGGCTGATCAACTGCACTTCGCAACCAGTCACACTGCAGCTGCGATCT
TTCCAAGCATTGTCCAGGCAGCCGCTCAAATTGGCCGAACTGCGTCAAAT
GCCGGGTCTCAAAGGCATCATGCAATCCTACTGGTTCCTGGCACCGCCAA
TTCGTTACTCCCGGAACTCCCGCGAAAACGAATTGGATCTGGGCGACGAA
GCAGTGCTCTCAAGCTCCAAGCAACGGTTGAGGCGCAAACAAAAGTACCG
AGAAACCGACGATGCGGCTGTTGATGAGGACGACTTGTACGCCAATGCAC
ACAAAATCACGTTGCGAAGCAGTGATAGCGGCGACGAGGAGCACACCGCT
AGTGTCCACGAGATGTGCGACGAGTACTTCCACTACCTGCTTGCAAGCTT
TCTAGACCAT
BO25516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10516-RA | 1029 | CG10516-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10516-RA | 1329 | CG10516-RA | 166..1192 | 16..1042 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15968998..15969560 | 340..902 | 2815 | 100 | Plus |
| 3L | 28110227 | 3L | 15968369..15968693 | 16..340 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 15969624..15969765 | 901..1042 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:53:40 has no hits.
BO25516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:47 Download gff for
BO25516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 208..1233 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:02 Download gff for
BO25516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 167..1192 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:27:00 Download gff for
BO25516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 167..1192 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:27:00 Download gff for
BO25516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15968370..15968693 | 17..340 | 100 | -> | Plus |
| 3L | 15968999..15969560 | 341..902 | 100 | -> | Plus |
| 3L | 15969626..15969765 | 903..1044 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:02 Download gff for
BO25516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15961470..15961793 | 17..340 | 100 | -> | Plus |
| arm_3L | 15962099..15962660 | 341..902 | 100 | -> | Plus |
| arm_3L | 15962726..15962865 | 903..1044 | 98 | | Plus |
BO25516.pep Sequence
Translation from 16 to 1060
> BO25516.pep
MLLPPYQEACNPGFCDCPFPNSIEVTNHKGHIPDLVRCQCGEDESGNVNA
WRWHATDESDAVVTDRDIIFHPTYSQGTAIVRGEQALKTNMVHFWEMRVI
TTLAGTDVMFGIGTESVNLGQFKFHFVSALGTNAQSWGFSYSGRIQHCGE
LLPYGQKFSQGCLIGVCLDRTRGHLEFYLNRRSLGVAYTNVPTDPDVKIY
PMVCSTAAKSVIRLINCTSQPVTLQLRSFQALSRQPLKLAELRQMPGLKG
IMQSYWFLAPPIRYSRNSRENELDLGDEAVLSSSKQRLRRKQKYRETDDA
AVDEDDLYANAHKITLRSSDSGDEEHTASVHEMCDEYFHYLLASFLDH
BO25516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10516-PA | 342 | CG10516-PA | 1..342 | 1..342 | 1836 | 100 | Plus |
| SP555-PD | 293 | CG14041-PD | 59..261 | 45..245 | 291 | 36.7 | Plus |
| SP555-PB | 293 | CG14041-PB | 59..261 | 45..245 | 291 | 36.7 | Plus |
| SP555-PC | 301 | CG14041-PC | 59..261 | 45..245 | 291 | 36.7 | Plus |
| SP555-PA | 301 | CG14041-PA | 59..261 | 45..245 | 291 | 36.7 | Plus |
