BO25528.complete Sequence
2164 bp assembled on 2010-07-15
GenBank Submission: KX797724
> BO25528.complete
GAAGTTATCAGTCGACATGGCCAGCAGCAAGGAGTTATGCTCCATCCGGG
AATGGGCACCGCTCACGGAGGTCATCGAGCGGATTCCGGCGCGCCTGCAG
CGCGGTTTCTTTCCGGCGAATCTCAACCTGACCTGTGTGGACGCCACCGA
GGAGTTCCTAGCCATGGGCAGCGACGCGGGCATCGTCTTCTGGTATAATC
GCCACACGGGCGAGATGCAGAAGCTGAAGGCTGAGGTGGCCACTCGGATT
ACGTGCGTGCGGGTTGTCAACTCCGTCGAGTACATGGTTGCGGCTGGGTG
CGCCAACGGGCAGGTGAGCATCTTCCAGATACAGAAGGAGCTGCCACGGG
ACCTTGATTTGGTGGCTCCTTGCACCAAGAGTCGGCCCATTGAGCGGTAT
ACTATCCGGGATCTGCACAAGTGCGTGGTCAGCTGCTGTGAGTGGTCCAA
GAACGGGATGAAGCTCTATTCCGGCGATCGCCAGGGAGTGGTGGTGCTCA
CGGAGCTCGATTACCAGGCGCACCTCAGCAAATCGGTGGAGATCCTGAGC
GAAGCATACGAGATCGTACAGCTTAGCGTTCGGCAGAGCTACCTACTGGT
GGCCACCCTCTACCGTTGCATCGTATGCCAGATGGACGCTCAAACCTCGC
AGTGGAACATCACCCAGGTGGGAAAGAAGGATCGCAAACAGCTCATCGAC
TGCGGGGCCATATTTCTGAAGAAACAGGAAGCAAACAAGCCGCAACTTGT
CTGCGGACGTCCTGGCCTGCGCTTCTGGGTGGCAGACGCTGCGGGAAATG
TGTCCAAAACAGTGATATTCCGAGATGCCGTTCTGCGCAGTCCCACCTGG
GAAATACCTATTCTGAACCCCAAGCAGCGCAGTGAGCCGTCCGGTACCCA
CCACACGTCTGCGTCTACATCTTCGACTAGACATTCTGGACTGGCAGATG
GCGATGTGGGCTACGTGGCCAGCAGCAACTTTCGGCAACTATATCTCTAC
GATGGCCACGACTCACTACTGGTAACACACGACGATGCAACTCTGTACGT
ACTTAACTTGGATCGACTCAAAGTAGAAGCCGTTGCGCGAGGATTGCGGA
AGATCCTTGATTTCTGCGTCTGTGGCAAAGAGATCTTCGTGTTGGAGGGC
AATCGCACATTGCTTCGTCTAGCTCCTTTACCGGAACCACCAAACAAGAC
GGCCAAGGTCATCTTCAATCCCCTGATGCCGCCTCCAGTTCCGGTTCTAG
GCTCGCACCTATCGCAACTGGAGTCGCCGATAGAGCTTCAGGCGGAGCCG
GTTCTTCAAAACGCAGAGGAGTGTTTCGAGTTGTCACCGGTGGAGCAACT
GAACCTTAATGTGCCCATCGAAATAGCTGTGGAGTCGCCACTGACTCAAC
AAAATCGTCGCTTGGAAATCTTCCGCCGCATCGGAGAAATGGACTTCGAG
CAGTCCATCGTCCACACCACCCGCAAGACATCCGTAGGCAAACCGCCCGA
GGCCAGTGGTGTGGGAATCGTTGAGATTGGCCATGAGACCCATGAGCTGC
GGTTGCCGCTTACCAATGCCGCCACACTAATGGAGGCGAGCTACTGCCAA
ATGGAGAACAATGGTCTGGCCTCTCCACTGGACATGAAGGCAGCCTTCCT
TCAGCATCTGCCCGATGCGCTAAGTCCCACCACCTTGCAGAAGACCGTTG
CGGAGAAGGCCAAGACCCTGGCCGCCGAGCTGGATCTGCCCGAGGTGCAT
CTGGCGCCGTTGTCGCAGGAGGAGCTGCATGCTGTCCAGGCTCAGACCCC
TCAAATAAGCGACCCTCTAATCAGGTGCTATCCCACGCACCTGGAAGAGG
CCAGTATCCAAACGAGTTCGCGGGAAAATGCAACCAACCCAGCTGATGAT
TATCATGTAGGCGAGCCCGTGGACGGGATACGGTCATTTGGCGTCTCCAA
GCGTAAAATGGCTCCGCTTAAGTTCGTCTTAAGCCAGCCAAAGCCGACTC
TGAAGTTGGAAGAGAACAGGGATGATGAGGAGTACACCAGCTTCCTACCC
GATTTTAGGCGGGCTGGCGATCCACTGGCGATCCACAAGGAAACGCCAGC
CACCAGTGACTCAAACACCTCCAGCGAGTGGGAGTTTTTGGACAACGCAA
GCTTTCTAGACCAT
BO25528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11141-RC | 2133 | CG11141-PC | 1..2130 | 17..2146 | 10635 | 100 | Plus |
| CG11141-RA | 2133 | CG11141-PA | 1..2130 | 17..2146 | 10635 | 100 | Plus |
| CG11141-RB | 2133 | CG11141-PB | 1..2130 | 17..2146 | 10635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11141-RC | 3243 | CG11141-RC | 134..2265 | 15..2146 | 10645 | 100 | Plus |
| CG11141-RA | 2497 | CG11141-RA | 134..2265 | 15..2146 | 10645 | 100 | Plus |
| CG11141-RB | 2753 | CG11141-RB | 390..2521 | 15..2146 | 10645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7461256..7462344 | 1608..520 | 5430 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7460663..7461200 | 2146..1609 | 2690 | 100 | Minus |
| 2R | 25286936 | 2R | 7462412..7462698 | 520..234 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 7462784..7463006 | 237..15 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:56:00 has no hits.
BO25528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:42 Download gff for
BO25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RA | 380..2509 | 17..2148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:15 Download gff for
BO25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RB | 392..2521 | 17..2148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:13 Download gff for
BO25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11141-RB | 392..2521 | 17..2148 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:13 Download gff for
BO25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7460661..7461200 | 1609..2148 | 99 | <- | Minus |
| 2R | 7461256..7462343 | 521..1608 | 99 | <- | Minus |
| 2R | 7462412..7462696 | 236..520 | 100 | <- | Minus |
| 2R | 7462786..7463004 | 17..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:15 Download gff for
BO25528.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3348166..3348705 | 1609..2148 | 99 | <- | Minus |
| arm_2R | 3348761..3349848 | 521..1608 | 99 | <- | Minus |
| arm_2R | 3349917..3350201 | 236..520 | 100 | <- | Minus |
| arm_2R | 3350291..3350509 | 17..235 | 100 | | Minus |
BO25528.pep Sequence
Translation from 16 to 2164
> BO25528.pep
MASSKELCSIREWAPLTEVIERIPARLQRGFFPANLNLTCVDATEEFLAM
GSDAGIVFWYNRHTGEMQKLKAEVATRITCVRVVNSVEYMVAAGCANGQV
SIFQIQKELPRDLDLVAPCTKSRPIERYTIRDLHKCVVSCCEWSKNGMKL
YSGDRQGVVVLTELDYQAHLSKSVEILSEAYEIVQLSVRQSYLLVATLYR
CIVCQMDAQTSQWNITQVGKKDRKQLIDCGAIFLKKQEANKPQLVCGRPG
LRFWVADAAGNVSKTVIFRDAVLRSPTWEIPILNPKQRSEPSGTHHTSAS
TSSTRHSGLADGDVGYVASSNFRQLYLYDGHDSLLVTHDDATLYVLNLDR
LKVEAVARGLRKILDFCVCGKEIFVLEGNRTLLRLAPLPEPPNKTAKVIF
NPLMPPPVPVLGSHLSQLESPIELQAEPVLQNAEECFELSPVEQLNLNVP
IEIAVESPLTQQNRRLEIFRRIGEMDFEQSIVHTTRKTSVGKPPEASGVG
IVEIGHETHELRLPLTNAATLMEASYCQMENNGLASPLDMKAAFLQHLPD
ALSPTTLQKTVAEKAKTLAAELDLPEVHLAPLSQEELHAVQAQTPQISDP
LIRCYPTHLEEASIQTSSRENATNPADDYHVGEPVDGIRSFGVSKRKMAP
LKFVLSQPKPTLKLEENRDDEEYTSFLPDFRRAGDPLAIHKETPATSDSN
TSSEWEFLDNASFLDH
BO25528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11141-PC | 710 | CG11141-PC | 1..710 | 1..710 | 3678 | 100 | Plus |
| CG11141-PA | 710 | CG11141-PA | 1..710 | 1..710 | 3678 | 100 | Plus |
| CG11141-PB | 710 | CG11141-PB | 1..710 | 1..710 | 3678 | 100 | Plus |
| p-PA | 826 | CG9770-PA | 27..334 | 36..375 | 176 | 23.4 | Plus |
