BO25532.complete Sequence
3160 bp assembled on 2010-07-15
> BO25532.complete
GAAGTTATCAGTCGACATGGCGAATAAGTGCCGCTGCGGTGCAGAGGTCC
TGGGCGGAGAAAACAGAGGTGTTTTCTGCGAGGGTCCCTTGCTGGATGCT
GTCCAGAGATCGAAAATGTTTCCCGACTGCAAACACTTTGTGGACATGAG
CTGCATTTTTACACCTGCCCAAACTTTGGCCGACTTCGATATGTTCACCA
ATTGCCGCAGAAACGATGGATCTCTAAGGTTCCTGCAAATGTTTGTCGAG
AAGCACTTCAATGATCCTGGCTCGGAGCTGGAACACTGGACACCGCCGGA
TTGGAAAGCACAGCCTTCGTTTCTTGCCAGGATCTCTGACCCGGAAATAA
AGCAGTTCGGTTCGGATGTCAATGGACTTTGGAAGGAGTTGGGGCGGCGG
ATTAAGGATGAAGTCAAGGAGAACCCCGATCAGTATTCCATTATCTACGT
ACCGAATCCTTTCATTGTTCCCTCCTCAAATTGCCGCGAGTACCGCTACT
GGGAATCGTTTTGGATCATTCGCGGCTTGCTGCAATGTGGCATGCATCAA
ACAGCCCGGGGCATGATCGATAACTATTTGGAATTGGTTCAGCAGTACGG
CTTTGTGCCTGGTTGTGGCCGGATATACTGCTCGGGTCGATCGAACCCTC
CACTCTTGATCATGATGGTAAAGGCATATGTGGAGGTGACCAAGGACGAG
CAGTACGCCATTGAAGCTTTGCCGCTGCTGGAAACCGAATACGATACCTT
CATCAGCAAGCACTCGGTGCAGGTGAAGGGCAGGACCATGTATCAGTATC
GGGATTCCTCGGCAGGACCCAGGCCCGAGGCCTATCGAGAAGATCTGGAG
TGTGTGGCAAGCATCAAGAGTCCTGTGGTCCGAGAGGTTATGTACACCGA
ACTCAAGTCGGCTGCTGAATCGGGTACGAACTTCAGTTCACGCTGGTATG
TGACCGTCGATGGTTCCAATAAAGGATCCTTTCGAGACATCAAAACATCT
GCCATTGTGCCCGTGGAGCTGAACTGCATTGTTTTCCGGAGTGGCAAGAT
CCTGGCCGAGTTTAATCGCAAAGCGGGCAATACGAAAAAAGCCGATGAGT
ATCAGGATAGAGCATGTGTCCTAGTAAAAGCCATTCGGGATAATTTATGG
AATGCCCAAGCCGGCATTTGGCTGGACTACGATCTGGTGAACAACAAGCC
ACGCAACTACTTCTGCTGCACCAACTTTGCTCCGCTGTGGGCCAGGGCCT
TTCCCTTGGTGGACACTGAGAAGGTGTCCAAGGGGGTGATGCAGTACATC
AAGACCAATGATTTGGATGCGCAGTATGGTGGTGTGCCGTACACGATGAA
TAAGGAGTCGGGCCAGAATTGGGATCACCCCAATGTCTTTCCGCCCATGA
TGTTCCTGATCATCGAGGGACTTGAGAATCTGGGCACTCCGCCGGCAAAA
GCCATGTCCAAGCGATGGGCTCATCGATGGGTGAAGTCCAACTATGCGGC
ATACAAGTACGAGAGCTTCATGTTCGAGAAGTACTACTGCGAGGACTTCG
GCACATCTGGAGGATCTTCGCCGGAAAACACTCCGCTGGGTTACGGCTGG
ACAAACGGCGTGATCATCGAGTTCCTCTGCAAGTACGGCAAGGAGATAAG
CTTGGCCGACACCAGCGACGAGGGTAGCAAGAGCAAATCCAGAGGATCAA
AGCCATCCGGAAAATACGAGTACATCATTACCAGTGAGGCCAATATGGAC
GATCAGCCATCCAAGAAACGGTGCGTGTGTGGCGCTCCTTCAATGGTGGG
AACCATGTCGCACAAGTCGACTGCCACAACTGCAACCAGTGACTTTGCTC
AGCAGACACAGCCTCCTTGCTCCTGTGGCATTGCCCAGAAACAACGGTCA
CAGACGCAACCAGGAGAGGATGGCAAATGCTCATGTGGCGCAGGAGCGAA
GGAAAAGTCCCAGCAGCAATTGCAGCCAAAGGATGCGCCGAGTTGTGGAA
TATGTGGCTCCCAGAAACAGCAGCCATCACAAGCTCAAATGCAGAGATCT
CAGCAAAAAGTAGACGACGACCAGTGTACATGCTCTAGGAAAGAAGCACT
ACAGCAATCTCAATCGCAACAGCAGAGAACCCTGGGGATACAGCACGATC
CAGATTGTCCATGTGCCGGACCACAGCAAAAAGGAGCAGGACTAATTGTC
GTTCAAGGGCAAGTGCCGGATACCGATCCCGACTGCGAGTGCTCCATGGA
CGAACGACAGAAGCAGCAGATGGAACAGCAGCAAAAGCAACAGGACTGCA
TGCGGCAGCAGCAGCAGCAGCAACAGGAGCACCAGAAGCAGCAGCAACAG
CTCCAATCTGAACAGCAACAGGATTGCACCACCAAGCCACAGACGCAGGA
CTGCTCCCAGCATCTGAAGAAGTCCAATGGAGGCTGTGGTTGCCAGGATG
ACGAGGATGAGGATCGGCACGACGCGCTAACTGGACACTATTTTCCAGTG
GCCGACAAGGACCCCGATGACGTCTATCAACAGGAGAGCAAGTCGACACA
AAGGGAGTCGGGATGCGACGGTTGTGGCAGGGATGATTGCCCGGATCCTC
CGCAGGAGGACTGCGGTTGCAGTCCCGTAGCTAAGCCACAGCAGACACCC
ATTGCTGAATGTGCTCCTCAGCCGAAAGCGCCGCAGCCTGCACCTGCCGA
TGACTGCAGTTGCGCGGTGGGTAAGAGTCAGAGCAAAGCCGCTTCAGTCG
TACCACCGCCCACCTTTATATGCCCACATTGTGGAGGCGTAACATCCGAA
GCGTTCCTTTCCACACACACAATAGGCACCAATCGAACCATGGGGCCGCA
GGACGACTGTGGAGCAGCGGGTCAGCCACTTCGTGGACTTGCCAGCAAGG
GTATACAGAGTGGTCACAGCAAGGTGGTTGCCGGCGGTGCCGGTGCCGAG
TGTGCTCCTTGCAAGGCTCATGTGACCGCAGATTTTCCGGCTGGCCACGG
ACCAAAGCCTCTATTCAACAAGCAGTTCCCACTGGCGGATCCTGCGAGCA
ACTTCGACGCGTGTCCTCCGAAACGTGGATCTGATCCGACCAACAACAAG
AAGAAGAAATGCTGCAACTGCGACGAAAAAGAGGATGGGGAAGCAAGCTT
TCTAGACCAT
BO25532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6262-RA | 3129 | CG6262-PA | 1..3126 | 17..3142 | 15615 | 100 | Plus |
| CG6262-RB | 2604 | CG6262-PB | 1..2601 | 542..3142 | 12990 | 100 | Plus |
| CG6262-RC | 1401 | CG6262-PC | 1..1398 | 1745..3142 | 6990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6262-RA | 3398 | CG6262-RA | 124..3249 | 17..3142 | 15615 | 100 | Plus |
| CG6262-RB | 3417 | CG6262-RB | 124..3268 | 17..3142 | 15390 | 99.4 | Plus |
| CG6262-RC | 1899 | CG6262-RC | 84..1696 | 1530..3142 | 8050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16361709..16363321 | 1530..3142 | 8050 | 99.9 | Plus |
| 2R | 25286936 | 2R | 16360241..16361523 | 249..1531 | 6415 | 100 | Plus |
| 2R | 25286936 | 2R | 16359969..16360154 | 65..250 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 16359853..16359902 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:56:48 has no hits.
BO25532.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:44 Download gff for
BO25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 124..3249 | 17..3144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:18 Download gff for
BO25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 124..3249 | 17..3144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:29 Download gff for
BO25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 124..3249 | 17..3144 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:29 Download gff for
BO25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16359853..16359902 | 17..66 | 100 | -> | Plus |
| 2R | 16359971..16360154 | 67..250 | 100 | -> | Plus |
| 2R | 16360243..16361523 | 251..1531 | 100 | -> | Plus |
| 2R | 16361711..16363321 | 1532..3144 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:18 Download gff for
BO25532.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12247358..12247407 | 17..66 | 100 | -> | Plus |
| arm_2R | 12247476..12247659 | 67..250 | 100 | -> | Plus |
| arm_2R | 12247748..12249028 | 251..1531 | 100 | -> | Plus |
| arm_2R | 12249216..12250826 | 1532..3144 | 99 | | Plus |
BO25532.pep Sequence
Translation from 16 to 3160
> BO25532.pep
MANKCRCGAEVLGGENRGVFCEGPLLDAVQRSKMFPDCKHFVDMSCIFTP
AQTLADFDMFTNCRRNDGSLRFLQMFVEKHFNDPGSELEHWTPPDWKAQP
SFLARISDPEIKQFGSDVNGLWKELGRRIKDEVKENPDQYSIIYVPNPFI
VPSSNCREYRYWESFWIIRGLLQCGMHQTARGMIDNYLELVQQYGFVPGC
GRIYCSGRSNPPLLIMMVKAYVEVTKDEQYAIEALPLLETEYDTFISKHS
VQVKGRTMYQYRDSSAGPRPEAYREDLECVASIKSPVVREVMYTELKSAA
ESGTNFSSRWYVTVDGSNKGSFRDIKTSAIVPVELNCIVFRSGKILAEFN
RKAGNTKKADEYQDRACVLVKAIRDNLWNAQAGIWLDYDLVNNKPRNYFC
CTNFAPLWARAFPLVDTEKVSKGVMQYIKTNDLDAQYGGVPYTMNKESGQ
NWDHPNVFPPMMFLIIEGLENLGTPPAKAMSKRWAHRWVKSNYAAYKYES
FMFEKYYCEDFGTSGGSSPENTPLGYGWTNGVIIEFLCKYGKEISLADTS
DEGSKSKSRGSKPSGKYEYIITSEANMDDQPSKKRCVCGAPSMVGTMSHK
STATTATSDFAQQTQPPCSCGIAQKQRSQTQPGEDGKCSCGAGAKEKSQQ
QLQPKDAPSCGICGSQKQQPSQAQMQRSQQKVDDDQCTCSRKEALQQSQS
QQQRTLGIQHDPDCPCAGPQQKGAGLIVVQGQVPDTDPDCECSMDERQKQ
QMEQQQKQQDCMRQQQQQQQEHQKQQQQLQSEQQQDCTTKPQTQDCSQHL
KKSNGGCGCQDDEDEDRHDALTGHYFPVADKDPDDVYQQESKSTQRESGC
DGCGRDDCPDPPQEDCGCSPVAKPQQTPIAECAPQPKAPQPAPADDCSCA
VGKSQSKAASVVPPPTFICPHCGGVTSEAFLSTHTIGTNRTMGPQDDCGA
AGQPLRGLASKGIQSGHSKVVAGGAGAECAPCKAHVTADFPAGHGPKPLF
NKQFPLADPASNFDACPPKRGSDPTNNKKKKCCNCDEKEDGEASFLDH
BO25532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6262-PA | 1042 | CG6262-PA | 1..1042 | 1..1042 | 5703 | 99.9 | Plus |
| CG6262-PB | 867 | CG6262-PB | 1..867 | 176..1042 | 4727 | 99.9 | Plus |
| CG6262-PC | 466 | CG6262-PC | 1..466 | 577..1042 | 2582 | 100 | Plus |
| Treh-PG | 560 | CG9364-PG | 16..547 | 16..546 | 1479 | 49.7 | Plus |
| Treh-PA | 560 | CG9364-PA | 16..547 | 16..546 | 1479 | 49.7 | Plus |
