BO25537.complete Sequence
2761 bp assembled on 2010-07-15
GenBank Submission: KX798591
> BO25537.complete
GAAGTTATCAGTCGACATGGCCAACCAACTGGACGCCAGTGTGAAGGACG
ACCTGAAGACGCAGTTCGTCACCCGCGAGGGCACCTACCGCCTGCTGACC
CTCTCGGAATACTCGCGGCCCAACCGGGTGGGCTACAGCAGCAACCAGAG
CTCGCCGCAGGTGCGCGTCTCCATGGTGACCCTGCCCAGTCCGGCGCAGG
GCAAGCTCGGCTCGGATGTGGGCGTGGGCACACCTGTGGGCGGCGGAACA
GCAGGAGCCAACACCACCACAACGAATGGCAGCTCGCCGGGAGCGTCGCC
TACGGGAGCAGCCGGAGCCAGCACAGCAATATCGAATGGAGGCGCTGGCG
GTGACTATAGCCACAGCAACCACAACAGCAACAGTGCCGGAAACAACACT
GTGGAGGCGCGTCTGGGCGGCGGCATATCCATGCACTCCATGATGAACGG
CGGCGTCGTCGACCAGAATGGCGTGGCCACCAATCAGGTCCTAGGAGGCG
ATCGCATATGCTTCAACTTCGGACGAGATCTCTACGTTTACTCCTTTCGC
GGAGCCAAGAAGGGCACGGAGATGAGCAAGCCGATCGATAAGAAGTTCTA
CAAGGGCACCAATCCCAGCTGCCACGACTTCAACATAAGCTCGGCCACGC
CCACGGGAGCGCCCCTTCTGGTGGGCTTCACCACAGGTCAAATCCAGCTG
GTCTCCCCGCACGTTGGTCCTCGGGAAGTGAGGAAGCTCTTCAACGAGGA
GCGACTGATCGACAAGACCAAAGTGACCTGCCTAAAGTGGCTACCCAACT
CACCGCACCTGTTCCTCGCCGCCCACGCCTCAGGTCACCTGTACCTGTAC
AACGAGGAACTACCCTGCGCCGCCACAGCGCCCAGCTATCAGCCCTTCAA
GCTTGGCGACGGCTACACGATACTCACCAGCAAGTCCAAGACCACAAGGA
ACCCGCTCTTCAAGTGGGTCTTCAGCACCGACAACTGCTGCGTCAATGAG
TTCTGCTTCTCGCCTTGCGGATCTCACTTGGCGGTGGTTTCCCAGGACGG
TTTCCTGCGCGTCTTTCACTACGACACCATGGAGCTGCTCGGAATCGCAC
GCTCCTACTTTGGCGGCTTCCTCTGCGTGTGCTGGTCCCCTGACGGCAAG
TACATTGTCGTGGGTGGCGAGGATGACCTGGTGACTGTGTGGTCGCTCCA
CGAGCGACGTGTAGTGGCTCGCGGACAGGGCCATCGGTCCTGGGTCTCTG
TGGTAGCGTTTGACCCGTATACCACCTCGTACACAAACTGGGATGGCGGC
GACTTCAGCGACGATGAGAATCAAATGAACGAGTACTCCCATTCGCGAGA
GGCGCGCTTCTCCGGAGATTCCACGGCCAACGGTGGCTTCGAGGGTTTCG
ACCGAAACTCCACACCCGTTCACGCTGACCGCAACGGACCACACTCGGCC
TCCTTTCGCTCGGACGCTTCTTCGGCCGAAAAGCTAATGAGTTATAGACT
TGGCTCCGTCAGTCAGGATACCCAGATCTGCCTATGGGACATCACGGAGG
ACGTTCTACGCCACCCATTGGTGTTAAGGCAGCCCGCTAACAGTGAAAGG
GCCTATCTCAACGGTGGTGTCGACGAAGAAGCGGAAGCAGAAGACGGCAT
AAAGGTAATCCGACCAGTGGCCATGTCTGGTCAAGCGACTGGACAGCAAG
CGGAATCGGGCAGCTGTAGTCCAACACGGGAAGCAGCGGGCGGAGGCACA
GGGAACGGTGCTGGCGAGCACAGCAATAGCAGTTCCAGCAAGTTCTCAAC
CGCCAACTGCACGATATCCTCGCAATCCTCGCCCGACGACTGCGACACCG
AGGCAGCCACTCCCGCCTCAACTTCATCGAATGCGGGCGCAGGCTCGGTG
GCTGGAGCGGGAGCGGTGGCCTCAACGAAGCAGAACAACCGCAACCATGG
CACTGGCAACTCAATCAAATTCCCCAACTGCATCAGCGCCACCAAGTCAG
ACAGCATTGACGGAGGCGGCGGCAGCGGGAGTGGACAGAGGCCGTCGCAG
ACTACATCGGGATACAACAGCAAGACTTCCAACAGCTCGAACAAGTCCTC
CAACTCGGGCAGCGGCTTCAGCGCCTTCAACAGCCTCACGCAGCGTCTCT
CGAACTTCAGTTTCCTGAGCAGCTCGGAAAAGAAGGGCGCTGGCTATGAG
GGAAGCCATTCCACCGCGCACCGTCAGCACCGCAAGGCAATGAGCATGCT
GAAGAGCTACAACCAACACAACCACACTGGCGGACACAACAACCACAGCC
AGAGTAACAACAGCAGCTCCTCCAACTTTGGCCACTCGAGCACTCTGGAT
TCGAATGCAGCCGGGGCCATTGGCAGCAGCTCGACGGCGCATAGTTTCGG
ATCACTGAAACTGAGCCGGTCCTCGCACCACTCCTCATTGGCCACAGCCG
CCCATGCGTCGGGATCTGCAGCGGGCTCTGGCTCCGGTGTCAGCAGCTTC
GATCCCATGCAGCTTATCGGAACTCCTGCCTGCCCCCGTTTCGATGAGTG
CCCACTGCTGGAGCCGCTGGTCTGCAAGAAGATCGCCCACGAGCGGCTGA
CGGCGCTGATCTTTCGCGAGGACTGCTTCCTGACGGCGTGCCAGGATGGA
TTCATCTACACCTGGGCGCGGCCAGGTCATGCCACGCACGCCACTCAGCA
CTTGTCACCTGGACAGGCGGCGGCGCCCGGCGGGACGGTAATTGCAAGCT
TTCTAGACCAT
BO25537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6420-RB | 2730 | CG6420-PB | 1..2727 | 17..2743 | 13635 | 100 | Plus |
| CG6420-RA | 2730 | CG6420-PA | 1..2727 | 17..2743 | 13635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6420-RB | 4175 | CG6420-RB | 505..3231 | 17..2743 | 13635 | 100 | Plus |
| CG6420-RA | 3698 | CG6420-RA | 505..3231 | 17..2743 | 13635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26720919..26722855 | 2686..750 | 9685 | 100 | Minus |
| 3R | 32079331 | 3R | 26724166..26724712 | 563..17 | 2735 | 100 | Minus |
| 3R | 32079331 | 3R | 26722926..26723116 | 751..561 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 26720791..26720848 | 2743..2686 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2664 | 1975..2326 | 199 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6860 | 2218..2326 | 149 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2410 | 296..398 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2422 | 288..398 | 137 | 59.3 | Plus |
| G5 | 4856 | G5 G5_DM 4856bp | 550..617 | 68..1 | 133 | 66.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6803 | 2255..2317 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6761 | 2269..2317 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 2211..2326 | 116 | 57.6 | Plus |
BO25537.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:47 Download gff for
BO25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 504..3230 | 17..2745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:23 Download gff for
BO25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 505..3231 | 17..2745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:36 Download gff for
BO25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6420-RA | 505..3231 | 17..2745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:36 Download gff for
BO25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26722926..26723114 | 563..751 | 100 | <- | Minus |
| 3R | 26720789..26720847 | 2687..2745 | 96 | <- | Minus |
| 3R | 26720919..26722853 | 752..2686 | 100 | <- | Minus |
| 3R | 26724167..26724712 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:23 Download gff for
BO25537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22546511..22546569 | 2687..2745 | 96 | <- | Minus |
| arm_3R | 22546641..22548575 | 752..2686 | 100 | <- | Minus |
| arm_3R | 22548648..22548836 | 563..751 | 100 | <- | Minus |
| arm_3R | 22549889..22550434 | 17..562 | 100 | | Minus |
BO25537.pep Sequence
Translation from 16 to 2761
> BO25537.pep
MANQLDASVKDDLKTQFVTREGTYRLLTLSEYSRPNRVGYSSNQSSPQVR
VSMVTLPSPAQGKLGSDVGVGTPVGGGTAGANTTTTNGSSPGASPTGAAG
ASTAISNGGAGGDYSHSNHNSNSAGNNTVEARLGGGISMHSMMNGGVVDQ
NGVATNQVLGGDRICFNFGRDLYVYSFRGAKKGTEMSKPIDKKFYKGTNP
SCHDFNISSATPTGAPLLVGFTTGQIQLVSPHVGPREVRKLFNEERLIDK
TKVTCLKWLPNSPHLFLAAHASGHLYLYNEELPCAATAPSYQPFKLGDGY
TILTSKSKTTRNPLFKWVFSTDNCCVNEFCFSPCGSHLAVVSQDGFLRVF
HYDTMELLGIARSYFGGFLCVCWSPDGKYIVVGGEDDLVTVWSLHERRVV
ARGQGHRSWVSVVAFDPYTTSYTNWDGGDFSDDENQMNEYSHSREARFSG
DSTANGGFEGFDRNSTPVHADRNGPHSASFRSDASSAEKLMSYRLGSVSQ
DTQICLWDITEDVLRHPLVLRQPANSERAYLNGGVDEEAEAEDGIKVIRP
VAMSGQATGQQAESGSCSPTREAAGGGTGNGAGEHSNSSSSKFSTANCTI
SSQSSPDDCDTEAATPASTSSNAGAGSVAGAGAVASTKQNNRNHGTGNSI
KFPNCISATKSDSIDGGGGSGSGQRPSQTTSGYNSKTSNSSNKSSNSGSG
FSAFNSLTQRLSNFSFLSSSEKKGAGYEGSHSTAHRQHRKAMSMLKSYNQ
HNHTGGHNNHSQSNNSSSSNFGHSSTLDSNAAGAIGSSSTAHSFGSLKLS
RSSHHSSLATAAHASGSAAGSGSGVSSFDPMQLIGTPACPRFDECPLLEP
LVCKKIAHERLTALIFREDCFLTACQDGFIYTWARPGHATHATQHLSPGQ
AAAPGGTVIASFLDH
BO25537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6420-PB | 909 | CG6420-PB | 1..909 | 1..909 | 4803 | 100 | Plus |
| CG6420-PA | 909 | CG6420-PA | 1..909 | 1..909 | 4803 | 100 | Plus |
| Alh-PD | 1323 | CG1070-PD | 228..532 | 547..827 | 181 | 25.8 | Plus |
| Alh-PL | 1332 | CG1070-PL | 228..532 | 547..827 | 181 | 25.8 | Plus |
| Alh-PA | 1376 | CG1070-PA | 281..585 | 547..827 | 181 | 25.8 | Plus |
