BO25541.complete Sequence
1624 bp assembled on 2010-06-28
GenBank Submission: KX797102
> BO25541.complete
GAAGTTATCAGTCGACATGGAGATCATTCTACGACTGCTGGCCTTCATTC
TGAATGCCTTTGGCATGTTGGTGAATAAGATTCTAGATTTTGTATTGCCC
CGTCAGAAACCCAAATTTTCGGGCATTCGTAATCCCCTGCTGAAGAAGTC
CGTCGTTGAATTGGTCACCCAATTGCGACGCGGCGAGATCACCTCGGTGG
AGTTGGTTAGCGCCTATATAGCACGTGTGCAGGAAGTGAATCCTTCTCTG
AATGCCGTTGTCGAGGATCGATTCGAGGCTGCCCTCCAAGATGCAAAATT
GGCAGATCAGTTCATCGAAAAGGCGAGCTCTGAGTTCGATCGTGTGGCCC
TGTACACCAAGTATCCCATACTGGGTGTACCGTTTACTGTCAAGGAGTCA
TGTGGTCTTAAAGGATTATCCTTTGCCGTGGGCAGTCTTGCTCGCAAAAA
TATGAAAGCCCCCCAGGACGGCGATGTGGTTGAACTGGTCCGTGCTGCTG
GTGGCATACCCCTTTTGGTGTCTGCCAATCCAGAGTTTTGCATGAGTTTC
GAAACCAGCAATAATATCCAAGGACGTTGCTTGAATCCATATGATCTGCA
ACGAACTTCCGCCGGATCTTCTGGCGGCGAGGCATCATTGAATGGCTGTG
GAGCCACAACTTTTGGTGTGGGCTCCGATATCAGTGGTTCCATTCGCCTG
CCGGCTCTGTTCTGCGGCGTTTTTGGCCACAAGCCCACTGGCGGGCTTAC
GTCGGTCAAGGGTCACTTCCCCTACTCGTTGACGGACAAGAAATTCTCCG
AGATGCTGCAGATCGGTCCCATCACAAGATTCGCCAGGGATTTGCCCTTG
CTGTTGGAAATAATGGCGGGCGATAAAAAACACAAACTGAAAATGTCTGA
ACCAGTTGCCCTGAAGGACATGAAGGTATACTATGCCTTTGGATACTCCG
GCTTTAACTGCCTCACCCATCCCGTGGTGGACTTCGACATAAAACTGGCC
ATCACCAAAGCTGTCACGTGCTTGGAAAGAGGAGGTGTGCAGTCCAAGAA
GTTGGATCTTAAATTCCTGAGAAACTCTCTCGAGATTGCCCTGGTTTCCC
TGGTGGACTTGAAGGGTCTGCCCAGTATCGTAACACAGCGGGCGGATCGT
GATCCATCGATGCGTTTGCTGATGGTGGAACTCTTCAACAGCATCATAGG
TCACTCAATCTTCACCAAAGAGGCCATGGTACTGGAGGTGATGAAGCGAT
TCAACGGCCTTATGGCCACTGGAAACATGGAAGAATACCGAGTTGAGGCC
CAGAAAATAAAGAGCCATCTGAATCAATTGCTTGGTACCCAAGGAGTCCT
CATCATGCCCACCTTCCACACTAGCGCCCTATGTTTTCACACCTCGCTGT
TAAACGTGACGGGGATCGACAATCTGCTGCTGTTCAACATCCTTGGTCTG
CCCGCCACCCATGTGCCCATGGGCACAAATCAACGGGGAATGCCCATAGG
GTTGCAGGTGGTGGCCGCCCAATATCAGGACAAACTCTGCCTGAAGGTCG
CCGCCGAACTGGAGGCCGTTTTTCACGGCTGGGTGCCACCGGTACCACAT
GACACAGCAAGCTTTCTAGACCAT
BO25541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7910-RB | 1593 | CG7910-PB | 1..1590 | 17..1606 | 7950 | 100 | Plus |
CG7910-RA | 1593 | CG7910-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7910-RB | 1869 | CG7910-RB | 179..1773 | 12..1606 | 7975 | 100 | Plus |
CG7910-RA | 1976 | CG7910-RA | 286..1880 | 12..1606 | 7975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8088076..8088591 | 412..927 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 8089149..8089430 | 1325..1606 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 8088819..8089093 | 1050..1324 | 1375 | 100 | Plus |
3R | 32079331 | 3R | 8087784..8088012 | 186..414 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 8087537..8087712 | 12..187 | 880 | 100 | Plus |
3R | 32079331 | 3R | 8088642..8088769 | 924..1051 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:53:07 has no hits.
BO25541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:39 Download gff for
BO25541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7910-RA | 291..1880 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:48 Download gff for
BO25541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7910-RA | 291..1880 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:51 Download gff for
BO25541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7910-RA | 291..1880 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:51 Download gff for
BO25541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8087542..8087712 | 17..187 | 100 | -> | Plus |
3R | 8087786..8088011 | 188..413 | 100 | -> | Plus |
3R | 8088078..8088589 | 414..925 | 100 | -> | Plus |
3R | 8088644..8088769 | 926..1051 | 100 | -> | Plus |
3R | 8088821..8089093 | 1052..1324 | 100 | -> | Plus |
3R | 8089149..8089430 | 1325..1608 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:48 Download gff for
BO25541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3913508..3913733 | 188..413 | 100 | -> | Plus |
arm_3R | 3913264..3913434 | 17..187 | 100 | -> | Plus |
arm_3R | 3913800..3914311 | 414..925 | 100 | -> | Plus |
arm_3R | 3914366..3914491 | 926..1051 | 100 | -> | Plus |
arm_3R | 3914543..3914815 | 1052..1324 | 100 | -> | Plus |
arm_3R | 3914871..3915152 | 1325..1608 | 99 | | Plus |
BO25541.pep Sequence
Translation from 16 to 1624
> BO25541.pep
MEIILRLLAFILNAFGMLVNKILDFVLPRQKPKFSGIRNPLLKKSVVELV
TQLRRGEITSVELVSAYIARVQEVNPSLNAVVEDRFEAALQDAKLADQFI
EKASSEFDRVALYTKYPILGVPFTVKESCGLKGLSFAVGSLARKNMKAPQ
DGDVVELVRAAGGIPLLVSANPEFCMSFETSNNIQGRCLNPYDLQRTSAG
SSGGEASLNGCGATTFGVGSDISGSIRLPALFCGVFGHKPTGGLTSVKGH
FPYSLTDKKFSEMLQIGPITRFARDLPLLLEIMAGDKKHKLKMSEPVALK
DMKVYYAFGYSGFNCLTHPVVDFDIKLAITKAVTCLERGGVQSKKLDLKF
LRNSLEIALVSLVDLKGLPSIVTQRADRDPSMRLLMVELFNSIIGHSIFT
KEAMVLEVMKRFNGLMATGNMEEYRVEAQKIKSHLNQLLGTQGVLIMPTF
HTSALCFHTSLLNVTGIDNLLLFNILGLPATHVPMGTNQRGMPIGLQVVA
AQYQDKLCLKVAAELEAVFHGWVPPVPHDTASFLDH
BO25541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7910-PB | 530 | CG7910-PB | 1..530 | 1..530 | 2695 | 100 | Plus |
CG7910-PA | 530 | CG7910-PA | 1..530 | 1..530 | 2695 | 100 | Plus |
CG7900-PB | 536 | CG7900-PB | 1..533 | 1..529 | 1253 | 47.8 | Plus |
CG5191-PB | 552 | CG5191-PB | 15..543 | 2..532 | 766 | 34.1 | Plus |
CG5191-PF | 528 | CG5191-PF | 31..519 | 33..532 | 757 | 35 | Plus |