Clone BO25544 Report

Search the DGRC for BO25544

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG13843-RA
Protein status:BO25544.pep: Imported from assembly
Sequenced Size:1120

Clone Sequence Records

BO25544.complete Sequence

1120 bp assembled on 2010-06-28

GenBank Submission: KX799245

> BO25544.complete
GAAGTTATCAGTCGACATGATTGCCAAGCTAAAGCAGGAATATGCGGAGC
GCTGGCATTATCCTCCAATTGTGCCGCCAGCCAAGCTTCGATATGTTGCA
TGTGGAAAGGTAGCATTCTACGGCCACAACGATAAGCCGAAATACAAGCC
CTGCTGGCAGCATCCGCTCAATGTGCAGGATCAAACCCGCTTTGGAGTTT
GCTGGGAGTATCCGCCGGAGCGGTACAAGCGTCGTCCGCTTCCGCCACCG
TGCCGGGGATCGACCATTCCCATCCATTTGCTGAAGCCAACCTTCAAGCA
TTGTGAGAATATCTACTCCCGCTACGATTTTAAGCTTGAGCAGTGTGTGC
ACGAGCAAACTCTAGTAGTTGACCAGAAAATGAAGGCCCTGAAGAATGAG
CTGGAGCAGGCCAAACCATTTCAGATTGAGAGGGTTAAGGAGATGCGTTA
TCATGGAGTGCGTTATCGCATTTTAGCCAGCTCGACCGGATGCACTAAGA
CCTATCCCGAGTACATAAGCCGGATGACCGAAGAGCGGGCCCTTTGCGAG
TTTCAGAGAGCCTACAATATCGTCAATCAGTCAAACACCGATTTGAGCAA
TTTATACCTGGACATGAGTGAGTCAAAAAAGGAGCTAGATCAACGCGTAG
CCAGGTTGGACCGGTCTTTAGGAAGTACATTCTTGAAAGAGCTAGATTCG
GTGCTGCAAATAATCGAGGACTTAAACACGTATTTTTTTGGCGTGATCGT
GAAGCTAAAGACGTGGGCGGAGCTGATGGACCCTATGAAAGAGCACTCTA
TAGAGGACTATCTGGGGCTATTGAGTCAGGAAACAGACTTCCGGACTTTC
ATGAGTGCCGGCATGGAAAACTGCACCTGCAAGCGTTGCGACAAGAAGGA
TCCCTTGAAGCCGTACCTTCCGTGCTGGTGTCAAATGGAATCTAGCGAGG
ATGTTACAAATCTTAAGAATTTTGACGACGATTGTCCAAAGAACATAGCT
GGCATCACGCAACACGAAAGTGACATTGTGACACCTAGTGACACCTCCTT
GTTAGTGAGGGCAGCGGATGAAAAGGCAAGGCTTGCGATGAATCAGGCGG
AAGCAAGCTTTCTAGACCAT

BO25544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-RA 1089 CG13843-PA 1..1086 17..1102 5295 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-RA 1183 CG13843-RA 54..1139 17..1102 5295 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22609538..22610106 17..585 2830 99.8 Plus
3R 32079331 3R 22610155..22610671 586..1102 2465 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 08:52:57 has no hits.

BO25544.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:37 Download gff for BO25544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 54..1139 17..1104 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:42 Download gff for BO25544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 54..1139 17..1104 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:48 Download gff for BO25544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 54..1139 17..1104 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:48 Download gff for BO25544.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22609538..22610106 17..585 99 -> Plus
3R 22610155..22610671 586..1104 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:42 Download gff for BO25544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18435260..18435828 17..585 99 -> Plus
arm_3R 18435877..18436393 586..1104 98   Plus

BO25544.pep Sequence

Translation from 16 to 1120

> BO25544.pep
MIAKLKQEYAERWHYPPIVPPAKLRYVACGKVAFYGHNDKPKYKPCWQHP
LNVQDQTRFGVCWEYPPERYKRRPLPPPCRGSTIPIHLLKPTFKHCENIY
SRYDFKLEQCVHEQTLVVDQKMKALKNELEQAKPFQIERVKEMRYHGVRY
RILASSTGCTKTYPEYISRMTEERALCEFQRAYNIVNQSNTDLSNLYLDM
SESKKELDQRVARLDRSLGSTFLKELDSVLQIIEDLNTYFFGVIVKLKTW
AELMDPMKEHSIEDYLGLLSQETDFRTFMSAGMENCTCKRCDKKDPLKPY
LPCWCQMESSEDVTNLKNFDDDCPKNIAGITQHESDIVTPSDTSLLVRAA
DEKARLAMNQAEASFLDH

BO25544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-PA 362 CG13843-PA 1..362 1..362 1958 100 Plus