BO25545.complete Sequence
1630 bp assembled on 2010-06-28
> BO25545.complete
GAAGTTATCAGTCGACATGGACCGGAATAACTTGGTCATTGTCGCCACTT
CGGGACAATTGCACCTTTTCTCGCCGCACTGTGCCATCCATCGGATTTAC
AGGAACGAGGAGGCCCTGCTGCGCTACATAATTGATTCCATCTTCCTTTT
TGCATTTATGCTGGCCCTGATTTTCCACAGCCACCAGACGGAGGCCACTT
ACCGACTGGACTTCATCTGGAAGCTGCAAGCCACGGAGGAAAAGGAGGAT
ATGGAGCACCTGCAGGCTTATAACCGTAAACTGCTCGAAAACATTCTGCC
CGTTCACGTTGCCGAGCATTTTTTGAGCCGCGAAAAGCACCTCGACGACC
TGTACCACGAGCAATGCGACTCGGTGTGCATTCTGTTCGCCAGCATACCT
AACTTCTCCGAGTTCTACGTGGAACTGGAGGGCAACAACGAGGGCGTGGA
GTGCCTGCGTCTGCTCAACGAGATTATCGCCGACTTCGACGAGCTGCTCA
GCGAGGAGCGCTTCCGATGCATCGAGAAAATCAAGAGCACGGGCGCCACT
TACATGGCGGCATCCGGACTAACGGCGAACACCTGCGACCGGGTGAACTT
CAGTCACGTGACCGCCATGGCCGACTACGCCCTCCAGCTGTTCGACAAGA
TCGAGGAGGTCAATATGCACTCCTTCAACAACTTTCGCATGCGAATAGGG
ATAAATATTGGTCCTGTGGTGGCTGGCGTTATTGGCGCCTGCAAGCCCCA
ATATGACATTTGGGGTAACGCCGTCAATGTGGCTTCGCGAATGGACTCCA
CAGGCTTGGTGGATCACATCCAGTGGCAAACGACGCCGAGACAGCGATCG
TTGAGGGAACTCGGATGCTGTGGCTTTTGGGGCGACTTCTTTGATAAGCA
GCATGTGAAGGACTCGTTGGCGGTGTTGGTGAAGCCGCGAAAGGGTCATC
GTCGCAGCTTTCTCATTATCCTTCTGGTCAGCATGGCACTGTACACCTTT
CAGCGTGACGAGGGGCAGTATCTCTACATGTACACCCTTGGCAAATTTGA
CTGGGATGTGAGTGCGTACAGCAACTTCAAGACATTCAAGTCATCGGCCT
ACGTGATTGCCATGCTATTGGCTGTGCCGCTGATGAACAAGATCCTTGGA
TGGAGGGATACGACAATCATTTTCATTGGCACCTGGGCCCATTCGATAGC
CCGCTTGTTCTTCTATTTCGCCACCAATACGGACTTGCTCTACGCCGGAG
CCGTTGTCTGCAGCTTGGGCCCAATTGTGGGTCCCATGATCCGGGCCATG
ACCTCAAAAATAGTGCCCACATCAGAGCGCGGAAAGGTATTTGCACTGCT
ATCAGTTTGCGATAATGCGGTGCCCTTCATCAGCGGTGTGTGCTATTCGC
AACTTTATAGGCGCACTCAGAATACGAATCACGGAGGAAATGTCTTCATC
CTAACCATTGCCACCCAAATCGCTGTCTTTGTGATGATACTTTGCTTACA
CATTGTTTTGGGCAAAAATTCACTGGCTGTTCCGGAAGTTCCTGAGAAGG
AGAGCGGACTTATTTCCCAAACGGAAGCTGTCCTGGAGGCGGAAATTGAG
GAGCACAAGAACGCAAGCTTTCTAGACCAT
BO25545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42514-RC | 1596 | CG42514-PC | 803..1593 | 822..1612 | 3910 | 99.6 | Plus |
| CG42514-RB | 1602 | CG42514-PB | 809..1599 | 822..1612 | 3910 | 99.6 | Plus |
| CG42514-RA | 1602 | CG42514-PA | 809..1599 | 822..1612 | 3910 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43373-RB | 5913 | CG42513-RB | 4173..5768 | 17..1612 | 7905 | 99.7 | Plus |
| CG42514-RC | 2087 | CG42514-RC | 1152..1942 | 822..1612 | 3910 | 99.6 | Plus |
| CG42514-RB | 2064 | CG42514-RB | 1129..1919 | 822..1612 | 3910 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16492662..16493003 | 1162..821 | 1680 | 99.4 | Minus |
| 3L | 28110227 | 3L | 16492171..16492500 | 1491..1162 | 1635 | 99.7 | Minus |
| 3L | 28110227 | 3L | 16507334..16507553 | 236..17 | 1100 | 100 | Minus |
| 3L | 28110227 | 3L | 16504759..16504942 | 699..516 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 16505061..16505230 | 516..347 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 16504322..16504448 | 823..697 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 16491983..16492103 | 1612..1492 | 605 | 100 | Minus |
| 3L | 28110227 | 3L | 16506376..16506491 | 347..232 | 535 | 97.4 | Minus |
| X | 23542271 | X | 14794638..14794782 | 536..392 | 275 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:52:51 has no hits.
BO25545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:36 Download gff for
BO25545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32158-RA | 802..2397 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:40 Download gff for
BO25545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43373-RB | 4021..5616 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:46 Download gff for
BO25545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43373-RB | 4173..5768 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:46 Download gff for
BO25545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16506377..16506486 | 237..346 | 98 | <- | Minus |
| 3L | 16505061..16505230 | 347..516 | 100 | <- | Minus |
| 3L | 16507334..16507553 | 17..236 | 100 | | Minus |
| 3L | 16504760..16504941 | 517..698 | 100 | <- | Minus |
| 3L | 16492171..16492499 | 1163..1491 | 99 | <- | Minus |
| 3L | 16492662..16493000 | 824..1162 | 99 | <- | Minus |
| 3L | 16504322..16504446 | 699..823 | 100 | <- | Minus |
| 3L | 16491979..16492103 | 1492..1614 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:40 Download gff for
BO25545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16485079..16485203 | 1492..1614 | 98 | <- | Minus |
| arm_3L | 16485271..16485599 | 1163..1491 | 99 | <- | Minus |
| arm_3L | 16485762..16486100 | 824..1162 | 99 | <- | Minus |
| arm_3L | 16497422..16497546 | 699..823 | 100 | <- | Minus |
| arm_3L | 16497860..16498041 | 517..698 | 100 | <- | Minus |
| arm_3L | 16498161..16498330 | 347..516 | 100 | <- | Minus |
| arm_3L | 16499477..16499586 | 237..346 | 98 | <- | Minus |
| arm_3L | 16500434..16500653 | 17..236 | 100 | | Minus |
BO25545.pep Sequence
Translation from 16 to 1630
> BO25545.pep
MDRNNLVIVATSGQLHLFSPHCAIHRIYRNEEALLRYIIDSIFLFAFMLA
LIFHSHQTEATYRLDFIWKLQATEEKEDMEHLQAYNRKLLENILPVHVAE
HFLSREKHLDDLYHEQCDSVCILFASIPNFSEFYVELEGNNEGVECLRLL
NEIIADFDELLSEERFRCIEKIKSTGATYMAASGLTANTCDRVNFSHVTA
MADYALQLFDKIEEVNMHSFNNFRMRIGINIGPVVAGVIGACKPQYDIWG
NAVNVASRMDSTGLVDHIQWQTTPRQRSLRELGCCGFWGDFFDKQHVKDS
LAVLVKPRKGHRRSFLIILLVSMALYTFQRDEGQYLYMYTLGKFDWDVSA
YSNFKTFKSSAYVIAMLLAVPLMNKILGWRDTTIIFIGTWAHSIARLFFY
FATNTDLLYAGAVVCSLGPIVGPMIRAMTSKIVPTSERGKVFALLSVCDN
AVPFISGVCYSQLYRRTQNTNHGGNVFILTIATQIAVFVMILCLHIVLGK
NSLAVPEVPEKESGLISQTEAVLEAEIEEHKNASFLDH
BO25545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42514-PC | 531 | CG32158-PD | 267..531 | 268..532 | 1373 | 99.2 | Plus |
| CG42514-PB | 533 | CG32158-PE | 269..533 | 268..532 | 1373 | 99.2 | Plus |
| CG42514-PA | 533 | CG32158-PC | 269..533 | 268..532 | 1373 | 99.2 | Plus |
| CG43373-PC | 1854 | CG42513-PA | 1189..1442 | 16..269 | 1254 | 95.3 | Plus |
| rut-PE | 1391 | CG9533-PE | 801..1039 | 37..269 | 667 | 53.1 | Plus |
| CG43373-PC | 1854 | CG42513-PA | 663..862 | 59..264 | 219 | 32.1 | Plus |
