BO25552.complete Sequence
1336 bp assembled on 2010-06-28
GenBank Submission: KX799235
> BO25552.complete
GAAGTTATCAGTCGACATGGTGAAGGATGAGCCCCTATCGGACGAGTCCG
CCGATGTGATTGTGCTTGCAGATCGCGAGGAAGATGACATATGCGAGCTG
GAGCACTTGCGTAAGCTCTTCATCGGCGGGCTGGCCCCGTACACCACCGA
GGAGAACCTGAAGTTGTTCTACGGCCAGTGGGGCAAGGTGGTCGATGTTG
TGGTGATGCGCGATGCTGCCACCAAGAGATCTCGCGGCTTCGGCTTCATC
ACCTACACAAAGTCTCTCATGGTCGACAGGGCCCAGGAGAACCGTCCGCA
CATCATCGACGGCAAAACTGTGGAAGCCAAGCGTGCTCTGCCCCGTCCCG
AACGCGAATCGCGCGAAACCAATATATCCGTGAAGAAGCTGTTCGTAGGC
GGTCTTAAGGATAACCACGATGAGGAATGCCTTCGTGAATACTTCCTCCA
ATTCGGGAATGTAGTCTCCGTTAAATTGCTTACTGACAAAACCACTGGCA
AGCGTCGCGGCTTCGCCTTCGTCGAGTTCGACGACTACGATGCAGTGGAT
AAGGCTATCCTTAAAAAGCAACATGCGATTAAGTACGTTCACGTGGACGT
CAAGAAGTCCATTTATAACCTGGACAAGAAGGAGAAACAGCAGCCAGGTG
GGCTGGCCAACGCCATCAAGCCGTCGCTCAATCAGCAGCAGCAACAGCAG
GGTGGCGGACAGCAGCCACCTAATGGCAATATGCAGGCACCTAGCTTTCG
ACCACCAGTGCCGCCACAACAGGCCATGGGCCCCTACCAACAACAGCCAC
CACCGGCGCCTATGTCTGCTCCACCACCAAACTTCAACTACTGGGGACCA
CCTCCGCCGGCTATGCCGCCCTACTACCAGCAGCCACCGCCGCAGCAGAT
GAACGGCTGGGGTCCATATCCGCCGCCACAACAAAATGGCTGGAATGCAC
CACCACCGCCACCACCGGGTGCCCAGCAGTGGCACGCCAACCAGTGGGGT
TGTCCTCCACCAGTGCAACAGGTGCCGCCGGTTGGAGCAGTGCCACCACC
CATGGGTCACAATGGACCACCGCCGACGGCTCCAGGTAACTGGAACATGC
CGCCCCCAGTGCCGGGTGCAGCTCCTCCATCCCACCAGCAGCAGTCTTCG
CAACAGCCAACACCACAACCAAATTTCGGCACTGGCTATCAGCAAAACTA
CGGAGGCGGACCATCCAAGCACAACAATATGAATGCAAACCGCATGAATC
CTTACTCGGCAGGTCCGCCCAACAGCTACCGTAGCATATACGGGCTACAA
CGCTGGACCACTGCCGCCGCAAGCTTTCTAGACCAT
BO25552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rb97D-RE | 1305 | CG6354-PE | 1..1302 | 17..1318 | 6480 | 99.8 | Plus |
| Rb97D-RD | 1305 | CG6354-PD | 1..1302 | 17..1318 | 6480 | 99.8 | Plus |
| Rb97D-RG | 1398 | CG6354-PG | 1..1298 | 17..1318 | 6385 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rb97D-RE | 2510 | CG6354-RE | 131..1432 | 17..1318 | 6480 | 99.8 | Plus |
| Rb97D-RD | 2633 | CG6354-RD | 131..1432 | 17..1318 | 6480 | 99.8 | Plus |
| Rb97D-RG | 2810 | CG6354-RG | 131..1428 | 17..1318 | 6385 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26874067..26874790 | 1284..561 | 3605 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26874853..26875101 | 564..316 | 1215 | 99.2 | Minus |
| 3R | 32079331 | 3R | 26875174..26875403 | 315..86 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 26875543..26875612 | 86..17 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 28601129..28601184 | 494..549 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2014-11-28 08:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2893 | 676..801 | 119 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6898 | 641..843 | 115 | 57.5 | Plus |
BO25552.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:31 Download gff for
BO25552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RE | 131..1432 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:28 Download gff for
BO25552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RD | 131..1432 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:38 Download gff for
BO25552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rb97D-RD | 131..1432 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:38 Download gff for
BO25552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26873963..26873998 | 1285..1320 | 94 | <- | Minus |
| 3R | 26874067..26874790 | 561..1284 | 99 | <- | Minus |
| 3R | 26874857..26875101 | 316..560 | 99 | <- | Minus |
| 3R | 26875174..26875403 | 86..315 | 100 | <- | Minus |
| 3R | 26875544..26875612 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:28 Download gff for
BO25552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22699685..22699720 | 1285..1320 | 94 | <- | Minus |
| arm_3R | 22699789..22700512 | 561..1284 | 99 | <- | Minus |
| arm_3R | 22700579..22700823 | 316..560 | 99 | <- | Minus |
| arm_3R | 22700896..22701125 | 86..315 | 100 | <- | Minus |
| arm_3R | 22701266..22701334 | 17..85 | 100 | | Minus |
BO25552.pep Sequence
Translation from 16 to 1336
> BO25552.pep
MVKDEPLSDESADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKL
FYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGK
TVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV
SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIY
NLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPP
QQAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGP
YPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNG
PPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPS
KHNNMNANRMNPYSAGPPNSYRSIYGLQRWTTAAASFLDH
BO25552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rb97D-PE | 434 | CG6354-PE | 1..434 | 1..434 | 2412 | 100 | Plus |
| Rb97D-PD | 434 | CG6354-PD | 1..434 | 1..434 | 2412 | 100 | Plus |
| Rb97D-PI | 471 | CG6354-PI | 1..423 | 1..423 | 2344 | 99.5 | Plus |
| Rb97D-PF | 471 | CG6354-PF | 1..423 | 1..423 | 2344 | 99.5 | Plus |
| Rb97D-PB | 471 | CG6354-PB | 1..423 | 1..423 | 2344 | 99.5 | Plus |
