BO25558.complete Sequence
820 bp assembled on 2010-06-28
GenBank Submission: KX798288
> BO25558.complete
GAAGTTATCAGTCGACATGTCGAATCTGTACACCGAATTGAAGAACGAGT
GGAGCAAACATGCGCCCAACCTCACCCACTGCTCCCGCCTCCTGGATGGC
TTCAAACTGGAGCTGGTGAGGTCCAACTTTGGAACAATCCAAACTGCATC
GAGTTCCAAGCAAAAGGATCAGCTAATCAAATCGCGGGAGATGCTGGAAA
TCGCCGTGGAACATAGCATCACCATCAAGGATTATGCTGCCTTCGAGAGA
TATATGGCCCAGTTGAATACCTACTACTATGATTACGATAAGTACTTGGA
ATCATCGAAGCACATGTACAAGTTCATGGGCCTAAATCTGCTATATATGT
TGGCCACGAATCGCCTTGCCGACTTCCACATCGAACTGGAACGTTTACCG
ACGGCTTTGCTGCTCCATGATAGCTTCATCCAACCCGTTTTGGCTTTGGA
GAACTACTACATGGAGGGCAGATACAACAAGATACTGCAAGCCAAGAAAT
CTATGCCCTCGGAGATCTATTCGAATTTTATGGACATCCTGGTGAACACG
GCGCGTGAGGAGATCGCATCCTGCATGGAGAAATCCTATCTGAAGATGGC
GCCCAAACTAGCTGCTCAGCGTTTGGGCCTTCGTCCCGGTTCCAAGGAGC
TTTTCGAGCTGGCGACTAAGCGCCAGTGGTGTCTGGACGAGGAGGGGAAC
TACGACTATGCTGGACTTCATACCAGACCCATGGAGAAGGTCCCTGCCAA
GGACATCGCCACGCATAATCTCACTTATGCCCAAGAGCTGGAGAAAATAG
TTGCAAGCTTTCTAGACCAT
BO25558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn12R-RA | 789 | CG11552-PA | 1..786 | 17..802 | 3750 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn12R-RA | 940 | CG11552-RA | 66..852 | 16..802 | 3755 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15041719..15042505 | 802..16 | 3755 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:52:46 has no hits.
BO25558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:34 Download gff for
BO25558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11552-RA | 67..852 | 17..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:37 Download gff for
BO25558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn12R-RA | 67..852 | 17..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:44 Download gff for
BO25558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn12R-RA | 67..852 | 17..804 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:44 Download gff for
BO25558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15041716..15042504 | 17..804 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:37 Download gff for
BO25558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15034816..15035604 | 17..804 | 98 | | Minus |
BO25558.pep Sequence
Translation from 16 to 820
> BO25558.pep
MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQK
DQLIKSREMLEIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHM
YKFMGLNLLYMLATNRLADFHIELERLPTALLLHDSFIQPVLALENYYME
GRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKMAPKLAA
QRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPMEKVPAKDIATH
NLTYAQELEKIVASFLDH
BO25558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn12R-PA | 262 | CG11552-PA | 1..262 | 1..262 | 1357 | 100 | Plus |
Rpn12-PA | 264 | CG4157-PA | 4..264 | 1..262 | 660 | 49.6 | Plus |