Clone BO25558 Report

Search the DGRC for BO25558

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptRpn12R-RA
Protein status:BO25558.pep: Imported from assembly
Sequenced Size:820

Clone Sequence Records

BO25558.complete Sequence

820 bp assembled on 2010-06-28

GenBank Submission: KX798288

> BO25558.complete
GAAGTTATCAGTCGACATGTCGAATCTGTACACCGAATTGAAGAACGAGT
GGAGCAAACATGCGCCCAACCTCACCCACTGCTCCCGCCTCCTGGATGGC
TTCAAACTGGAGCTGGTGAGGTCCAACTTTGGAACAATCCAAACTGCATC
GAGTTCCAAGCAAAAGGATCAGCTAATCAAATCGCGGGAGATGCTGGAAA
TCGCCGTGGAACATAGCATCACCATCAAGGATTATGCTGCCTTCGAGAGA
TATATGGCCCAGTTGAATACCTACTACTATGATTACGATAAGTACTTGGA
ATCATCGAAGCACATGTACAAGTTCATGGGCCTAAATCTGCTATATATGT
TGGCCACGAATCGCCTTGCCGACTTCCACATCGAACTGGAACGTTTACCG
ACGGCTTTGCTGCTCCATGATAGCTTCATCCAACCCGTTTTGGCTTTGGA
GAACTACTACATGGAGGGCAGATACAACAAGATACTGCAAGCCAAGAAAT
CTATGCCCTCGGAGATCTATTCGAATTTTATGGACATCCTGGTGAACACG
GCGCGTGAGGAGATCGCATCCTGCATGGAGAAATCCTATCTGAAGATGGC
GCCCAAACTAGCTGCTCAGCGTTTGGGCCTTCGTCCCGGTTCCAAGGAGC
TTTTCGAGCTGGCGACTAAGCGCCAGTGGTGTCTGGACGAGGAGGGGAAC
TACGACTATGCTGGACTTCATACCAGACCCATGGAGAAGGTCCCTGCCAA
GGACATCGCCACGCATAATCTCACTTATGCCCAAGAGCTGGAGAAAATAG
TTGCAAGCTTTCTAGACCAT

BO25558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-RA 789 CG11552-PA 1..786 17..802 3750 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-RA 940 CG11552-RA 66..852 16..802 3755 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15041719..15042505 802..16 3755 98.5 Minus
Blast to na_te.dros performed on 2014-11-28 08:52:46 has no hits.

BO25558.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:34 Download gff for BO25558.complete
Subject Subject Range Query Range Percent Splice Strand
CG11552-RA 67..852 17..804 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:37 Download gff for BO25558.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn12R-RA 67..852 17..804 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:44 Download gff for BO25558.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn12R-RA 67..852 17..804 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:44 Download gff for BO25558.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15041716..15042504 17..804 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:37 Download gff for BO25558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15034816..15035604 17..804 98   Minus

BO25558.pep Sequence

Translation from 16 to 820

> BO25558.pep
MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQK
DQLIKSREMLEIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHM
YKFMGLNLLYMLATNRLADFHIELERLPTALLLHDSFIQPVLALENYYME
GRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKMAPKLAA
QRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPMEKVPAKDIATH
NLTYAQELEKIVASFLDH

BO25558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-PA 262 CG11552-PA 1..262 1..262 1357 100 Plus
Rpn12-PA 264 CG4157-PA 4..264 1..262 660 49.6 Plus