BO25559.complete Sequence
4789 bp assembled on 2010-09-23
GenBank Submission: KX798699
> BO25559.complete
GAAGTTATCAGTCGACATGCTGCACAACAATCGCGACATTGCAGAGCCAA
ACACAACAACAACAGCAGCAACAGCTACCCCAATCACAACAACAACTGCA
GCAGCAGCAACAACAGAAGGCAATGGAACGGAGCCAACAATTGCCACGCA
CCTTGCAACAACATCTGCTGCTGCAGCAAAGACATCAGCTGGCGTAGGGG
AAACAAGTGCAACAGCTGAGGGTCAAACACCAGCAACAACAACAACAGCA
GCTGTGGCAGAGCGAACGAAATTAGCACAAACAGCTGATGCGACTGCTGC
GCCGATCGTTGATGCGACTGCTGCTGCGGCTGCAGCTACTGAAGCGACCG
CATTCGATGCTCAGATGCGAACGCAGCAACGACACAAGATCAAGATATAC
CACGATGCCAAGCAGACGGCCGTGTGGCGCACCGATTCGCTGGCCTCCAA
TCCCAGCTCGACTATCTGCCCGGATTTCGTCAGTTCGGGATCAGGAGGTG
TTGCAGGTGGTGTCGGTGGCACTGTCGCTGGCGGAGGAGTCACTGGAGCC
CTGGGCCTGCCCCCCAGGGGCATCATCCTGTCGACGGCGCCCAGCCTCCT
GCAGCGAAAATCATCGGACAGCTCGCTCACCTCGTCCATTGCGCGACGCG
TCTCGTTTCCGGATAACCAGCTGGTCACCGGCTACCTGGAGCCGGCCAAT
CCTTGGAAGCAAGTATACCTCGTGAAGAGCAGCTCCGAGATTGTCGATCA
GTATCAGCAGTCGTGTAAGAAGCACAACACCCAGCCATTAGAGAGCGTAG
TGGATCACCTGAGGACCCTGGATCTGAACCAAGCGCGGCAGCCTTTACTT
CCTCTTAAAGCGAAAGAATTAACCGCCAACGATTGCGAAGCGCTCGAGGA
GATTTTCAAACGGATACAATACACATGCATCGATCTGTCCGAGTGCACGC
TGGACGAGAGCAGTTTAATGGCCCTCTTCCAGATGATCGAATACTATGAA
GCTGCCAATGAGCTGGACATTTCCTACAACAAGGCGGAGATGACAAAGCG
CTGCTGGGAACTGTGTGCTTACATGGTGGAGCGCAGCCAAGAGCTGCAGC
TGCTCAACGCCGAGAGCAATCCGATAACAAAGTTGGGCGCCGACAGTCTT
GGGCGGGCCCTCGGTTCATCCAACCTGCACACATTAAAGCTGGAGCACTG
CGGCCTCAGGGGAGCGCCACTCGTCAATTTATGCCGTGGTCTTTATCAAA
ACAAAAGGCTCAAGGAGCTGTGGGTGGGGTATAACGACTTGGACTGTGTA
GATGCCCAGCACATAGCAGACATGCTGCGCTACAACCATAGCTTGGAGCT
AATCGACATTAGCAATAATAACATTAGGAACGAGGGTGTCATGTACCTGG
TACAAGCCCTAATCCTTCAGTCCACCGAGCTGGAGCGACGAATGGGTGCC
TTGAAGCGCACCCGTGCCATTGAGGTGGACGAGTGCGTGTCACCTATGGA
AACGGAGCCCCCGGAAGCCATTCCCCCATCCACTAGCTCGACCACCAATC
AAGCGAAAGACTTCGTCGATGGTGAGTTACCTGCGCACGAAGCCTCCATT
TTAGAGACAACGTCGGAGGAGGCGACATCTACTGATCCAGCGGTAGGTGT
TCTTGTGGATTTGGAGAATGATAACGACGACGAAAACACGGAGGACACTG
TTCGCACTGTCAGAAACTGCAACCAAAACGGAAGCGGCCAGTCGATGCTG
GACAAGCTGCTCTCCATGAATAGCGAAAGCAGCAGCGAAGAGGCGCCCTC
AAACATATCCACCGACACCTTGGCAGCCTGCTGCTCCGAGGACATCAGCG
AAATCAGCAACGAGATTTATGAACCCAATGCCGTCAAGCAGCCTACAGCA
GAAGGCGAAGTCGCTCCGGCCATGATCTCATCCAGCCCGATGGAGTCAGA
ATCGGTAGCTGTTGCAAGTGCAACCATGGAGCCGCTGTCTCCTGCGCATC
AACAACAGCAATGTTCTCAAAACGAACGCAACTTATGTGATATTACTCCC
TCAACAGAGGCTAAAACCGTTGAACCCAATGAATCCTGTGTACAGAACAA
CATCATAAACAACAATAATAATAACAATGCTAACAATTCCCACAACAATA
CCAATAATAATACAATTCAATTGCCATCGGAAGCAGGAGCATCAGCAATC
CTTTCAGTCGTACCACCGCAACTGGATATCGAAAACATTCCAAGTGGTTC
CTCGCCAGCGGCTATTTTTGAAGTCACGGCCGAGGAAAGCGACTGTATCA
ATGGCAGTGCTGTGGCGGGGGCTGCCGGGTCGCGTCCACTTGATGTAAAC
AAAAACGCCAAGGCTGGAGAAGACTTCGAGGACACGCACAGCACGGACTC
GGCGTTCGAGAGCGCATCTGAAGGCGACATAAGTCGCCATCTGCCCGACG
AGTTAAGCCGCCTTTCGGTGTTACTGGAGAGCACGCGACTGGATGATATG
ACGAAAGAGATGTGCGGCATAGAGACGGCTACCATTGCCACGGAGTCAAC
CGAGTGCCTTCTCGCAGCCCAGGAGGCAGCGACGCTCACACCTACGCCAG
TTGTCCCAGCGCTAGAAAAACTTGAAAATGCATTCCCGCCCCCAAAAGTA
ACCATTGCCGAGGAGTGCCTCCTGAAGGATAAAGAACTCAGCCCCAGTTC
CTATCCGTCTCTCAGTCCAGCGCCTACGCCCCCACCACCGTCCACGTCGC
CGGGAGGAGCAAGCCTTGGCTTGAGACGCACCGAGTCCAGTTGTGCGTAC
CTCAATCAGTCCAGTCGCAACCGATCGCAGAGCTCCGATAGCCTGTGCAG
CGAGACATCGCTCGACGGCATGAGTAGCGGTGCCAGCAACAACAGTGTCA
GCTCTACGGCTTCCGCTGATCCCAAGTTTGCGGAAAAACTAACTAAGAAT
GACACACTTTCGCGCCGGCAGCTGGCCGAGGCAACACTGGAGGCCAACCG
ATCGCCTAGCGGACTGAAGGCTCTTACTCTGTGGAATAATAATTTAAGCA
AGGACTGCGCACCTGCAGTGGCAGAATTACTGCAGAAGACCATTTCGCTG
GAACTGCTTAATATTGGCAAGAATTGTCTCTCCAATGATTTCGTTTCAAC
CATAAAGGACAGTTTGACGAAAAACACCACTCTGACAACTTTGGGGCTAC
AGAGTGCCCATCTAAATGCCAAGGGGATAGAGACACTGGCCTCCATCCTT
ACCTTTGGTGGCAACAGCAAGCTCCAGCGCATTGACATCCGCGACAATAA
ACTAGAGGTGGAAAGTCTGAATATAATCGCCGAGGTGCTCAAGTCCAATA
AGACGCTCACGCAGATCGACATTAACGATGAGCCAAAACGACTGACGATC
GGCAGCGATGCGCACTTGGATTACACAAGGGTGCTGGGCACCGTTCGCTC
CTTGTGCTCGCGAAATGAGAAGCGGCAAGCCCAGGAGCTGGCGGAGAAGA
CGGCGAACATGGTCGGCGGCGGCAGCAATGTGGGAGGCAGCCTTCCGGGC
ATACGGTGTCGCGGCGGTTACTACTTGGGCTCGCGGAAGATCTCGTTGAC
CTGCCACAGTCGGCCGATTGTAGACGCGGCTACTGGCACGGTGACTGCAA
CGTCAACCGCGACCGCTGCAGCAACCGCCCTGCCCACACCGACTGCTCTG
TTGGAGGTGAAGCGTGGACCACGTCTCCGCTCTCCGGGACCAAGTCCGCC
CACTATATCGCCGTCGTCCTCGCCGAACCGCAGCCGCTTTCACGTTTCAC
GGGTGGCTGAAGTGGCAAGTCCACTGATCTCGCCGCTGGCCCAGCATCCG
CCCCCGCACACGCCACGCTCGGCCAGCAGCTGTATGTCCATACCCACCAT
TGGATCGCCCAGTGGCAGTCAGAACAGCCTTAATGCCGTTGGGGCCCTGC
CGACCTCCAGTTCTCTGCCCGCCATGGCATCTGTTACCTCCTCGACGCAG
ACGATCAAGCGGCTGTCGGTATCGCCGAGGTCTCGCTTCCACGTGTCTCG
CATCTACGAGGATCCCCAGGTGCCGATGGCCAACCGGCAGATGCCGCCGA
TTACGCCACATACGCCACCAATTGATCTACCACCCACACCTATGCTGAAA
TCGGCGAGAAAGGCGGTCCTGTTGTCCGAAGCAGTGGAGGCGGCAGCTGC
TGCCGTTCCAGTAAGCAGTGTGGTCATTGTAGAGTCCAGCGATAACATCG
ACGCACACATAAGTACAAAAGCCGTAGAGGTAACCGGGCAAAAGGTTTCT
CCGCACCTGACCATATCACCCACCTCAAGTCACTCAAGCTCAACTTCGCC
CGGTAGCAGCAGCAGCGGGAGCAGTAGTAATTGTAATGGAAGCACCTCAA
CTTCCACCGACGTTACAGACTCTGTAGCCTCTTCTGGCCCAGAAGTTCCA
CAAAGGATCTGTCCCCTGGCCGTGTTCGGCGATAATGACATCACGTTGAC
CAAGGAATCGGCCGGCGTGGTTGCTCTCTCTGCAGCTGCTGCAGCGAACA
ATACGAATCCTGTTCTCAAAAGTGAACCAGAGTCGCTGCCGCCTGCCGAG
CCCGTCAGCAATGCGCCACAGACGCGTGCCCGGAAAACATCGTGGATAGC
CAACCCGTCGGCGGTAGACAAGCTGCTTACAATATTCAACATTGGCTCCT
CGCCGGAACCCAAGGCTAGTCAAATAAGCCACGTGCCCGCCGCCAACACG
ATCACAAACAGCTCACAGAGTGCAAGCTTTCTAGACCAT
BO25559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31635-RA | 4758 | CG31635-PA | 1..4755 | 17..4771 | 23685 | 99.9 | Plus |
| CG31635-RB | 5349 | CG31635-PB | 1..4753 | 17..4769 | 23675 | 99.9 | Plus |
| CG31635-RE | 4770 | CG31635-PE | 1..4767 | 17..4771 | 23530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31635-RA | 6833 | CG31635-RA | 1973..6727 | 17..4771 | 23685 | 99.9 | Plus |
| CG31635-RB | 6115 | CG31635-RB | 505..5257 | 17..4769 | 23675 | 99.9 | Plus |
| CG31635-RE | 5300 | CG31635-RE | 428..5194 | 17..4771 | 23530 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6635651..6637025 | 4771..3397 | 6860 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6637978..6639336 | 3397..2039 | 6765 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6639397..6640203 | 2039..1233 | 4020 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6645972..6646668 | 713..17 | 3470 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6640356..6640676 | 1233..913 | 1590 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6640735..6640936 | 913..712 | 1010 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7014 | 93..404 | 299 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6923 | 54..243 | 299 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2485 | 54..253 | 260 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6913 | 57..254 | 251 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2617..2966 | 46..388 | 248 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2551 | 101..398 | 230 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2466 | 107..285 | 210 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6899 | 122..300 | 206 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2843..2989 | 98..247 | 204 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6551..6897 | 48..395 | 196 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6929 | 196..407 | 183 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1035..1176 | 116..265 | 175 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6851 | 174..300 | 174 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6944 | 57..457 | 160 | 53.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 171..276 | 154 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2385 | 209..285 | 141 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1605 | 202..283 | 139 | 67.1 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 1737..1783 | 215..261 | 127 | 74.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7986 | 205..259 | 124 | 71.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9430 | 205..259 | 124 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1121 | 224..285 | 121 | 66.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 109..201 | 181..272 | 119 | 62.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9139..9231 | 181..272 | 119 | 62.8 | Plus |
BO25559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 16:53:25 Download gff for
BO25559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RA | 1947..6701 | 17..4773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:10 Download gff for
BO25559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RA | 1973..6727 | 17..4773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:36 Download gff for
BO25559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31635-RA | 1973..6727 | 17..4773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:36 Download gff for
BO25559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6635649..6637024 | 3398..4773 | 99 | <- | Minus |
| 2L | 6637978..6639335 | 2040..3397 | 99 | <- | Minus |
| 2L | 6639397..6640203 | 1233..2039 | 99 | <- | Minus |
| 2L | 6640357..6640675 | 914..1232 | 99 | <- | Minus |
| 2L | 6640735..6640934 | 714..913 | 100 | <- | Minus |
| 2L | 6645972..6646668 | 17..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:10 Download gff for
BO25559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6640735..6640934 | 714..913 | 100 | <- | Minus |
| arm_2L | 6635649..6637024 | 3398..4773 | 99 | <- | Minus |
| arm_2L | 6637978..6639335 | 2040..3397 | 99 | <- | Minus |
| arm_2L | 6639397..6640203 | 1233..2039 | 99 | <- | Minus |
| arm_2L | 6640357..6640675 | 914..1232 | 99 | <- | Minus |
| arm_2L | 6645972..6646668 | 17..713 | 99 | | Minus |
BO25559.pep Sequence
Translation from 16 to 4789
> BO25559.pep
MLHNNRDIAEPNTTTTAATATPITTTTAAAATTEGNGTEPTIATHLATTS
AAAAKTSAGVGETSATAEGQTPATTTTAAVAERTKLAQTADATAAPIVDA
TAAAAAATEATAFDAQMRTQQRHKIKIYHDAKQTAVWRTDSLASNPSSTI
CPDFVSSGSGGVAGGVGGTVAGGGVTGALGLPPRGIILSTAPSLLQRKSS
DSSLTSSIARRVSFPDNQLVTGYLEPANPWKQVYLVKSSSEIVDQYQQSC
KKHNTQPLESVVDHLRTLDLNQARQPLLPLKAKELTANDCEALEEIFKRI
QYTCIDLSECTLDESSLMALFQMIEYYEAANELDISYNKAEMTKRCWELC
AYMVERSQELQLLNAESNPITKLGADSLGRALGSSNLHTLKLEHCGLRGA
PLVNLCRGLYQNKRLKELWVGYNDLDCVDAQHIADMLRYNHSLELIDISN
NNIRNEGVMYLVQALILQSTELERRMGALKRTRAIEVDECVSPMETEPPE
AIPPSTSSTTNQAKDFVDGELPAHEASILETTSEEATSTDPAVGVLVDLE
NDNDDENTEDTVRTVRNCNQNGSGQSMLDKLLSMNSESSSEEAPSNISTD
TLAACCSEDISEISNEIYEPNAVKQPTAEGEVAPAMISSSPMESESVAVA
SATMEPLSPAHQQQQCSQNERNLCDITPSTEAKTVEPNESCVQNNIINNN
NNNNANNSHNNTNNNTIQLPSEAGASAILSVVPPQLDIENIPSGSSPAAI
FEVTAEESDCINGSAVAGAAGSRPLDVNKNAKAGEDFEDTHSTDSAFESA
SEGDISRHLPDELSRLSVLLESTRLDDMTKEMCGIETATIATESTECLLA
AQEAATLTPTPVVPALEKLENAFPPPKVTIAEECLLKDKELSPSSYPSLS
PAPTPPPPSTSPGGASLGLRRTESSCAYLNQSSRNRSQSSDSLCSETSLD
GMSSGASNNSVSSTASADPKFAEKLTKNDTLSRRQLAEATLEANRSPSGL
KALTLWNNNLSKDCAPAVAELLQKTISLELLNIGKNCLSNDFVSTIKDSL
TKNTTLTTLGLQSAHLNAKGIETLASILTFGGNSKLQRIDIRDNKLEVES
LNIIAEVLKSNKTLTQIDINDEPKRLTIGSDAHLDYTRVLGTVRSLCSRN
EKRQAQELAEKTANMVGGGSNVGGSLPGIRCRGGYYLGSRKISLTCHSRP
IVDAATGTVTATSTATAAATALPTPTALLEVKRGPRLRSPGPSPPTISPS
SSPNRSRFHVSRVAEVASPLISPLAQHPPPHTPRSASSCMSIPTIGSPSG
SQNSLNAVGALPTSSSLPAMASVTSSTQTIKRLSVSPRSRFHVSRIYEDP
QVPMANRQMPPITPHTPPIDLPPTPMLKSARKAVLLSEAVEAAAAAVPVS
SVVIVESSDNIDAHISTKAVEVTGQKVSPHLTISPTSSHSSSTSPGSSSS
GSSSNCNGSTSTSTDVTDSVASSGPEVPQRICPLAVFGDNDITLTKESAG
VVALSAAAAANNTNPVLKSEPESLPPAEPVSNAPQTRARKTSWIANPSAV
DKLLTIFNIGSSPEPKASQISHVPAANTITNSSQSASFLDH
BO25559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31635-PB | 1782 | CG31635-PB | 1..1587 | 1..1587 | 8008 | 99.9 | Plus |
| CG31635-PA | 1585 | CG31635-PA | 1..1585 | 1..1585 | 8006 | 100 | Plus |
| CG31635-PG | 1786 | CG31635-PG | 1..1591 | 1..1587 | 7983 | 99.6 | Plus |
| CG31635-PE | 1589 | CG31635-PE | 1..1589 | 1..1585 | 7981 | 99.7 | Plus |
| CG31635-PH | 1801 | CG31635-PH | 1..1606 | 1..1587 | 7978 | 98.7 | Plus |
