Clone BO25562 Report

Search the DGRC for BO25562

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG12470-RA
Protein status:BO25562.pep: Imported from assembly
Sequenced Size:619

Clone Sequence Records

BO25562.complete Sequence

619 bp assembled on 2010-06-28

GenBank Submission: KX799712

> BO25562.complete
GAAGTTATCAGTCGACATGGGTAAAAAGGGCAAAGGAAAGAAGGGCAAGA
AGCCCGCCGCAGTTGTGGCTCCCATCGAAGCGCCACCATGTCCTCCGTGT
CCGGAACCACCAAAGCAGATGCAACCACTTGACGCTTGTCCAGAGTCTAG
CGGACCCCACGATGTCCTTCGGGCTCAACCGAATCATTACCCGGCTCTTC
TTCGTATTCCGGAAACAATGGCGGTGGTGGGCTCTGAGAATGGATGCTAC
GATAGCATTTGCAAGCTCCTGAGAGCCGGATTCCGGTGTGCCGAGCGGGT
TTTCGTGATGGCCCCTTGGGGCAACTACGTGGTTTTCCGGTATCACAACA
ATAATGACTTTATTTACTTCCTGTTTGATGGATGCACCTGCGATGTTAAT
AGGTTCCGCTATCTAGACCTCAGCTGCGGAACTGCTGGATTTCTTTTCTT
CGATAATATGCACGACGTTATTAGTTATATTATCCAGTCTCGAAAGACGC
GTCTATATCTGGAGAATCTAAACAAGATTGCCATTGATCAGATTGTGGAG
GAGTATGGCGCTGTAACGTACACCCAAAAGGCAAAATGCATGCGATTCGC
TGCAAGCTTTCTAGACCAT

BO25562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-RA 588 CG12470-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-RA 1055 CG12470-RA 327..912 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 308207..308792 16..601 2930 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:52:01 has no hits.

BO25562.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:24 Download gff for BO25562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..912 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:19 Download gff for BO25562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..912 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:28 Download gff for BO25562.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 328..912 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:28 Download gff for BO25562.complete
Subject Subject Range Query Range Percent Splice Strand
X 308208..308792 17..603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:19 Download gff for BO25562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 202241..202825 17..603 99   Plus

BO25562.pep Sequence

Translation from 16 to 619

> BO25562.pep
MGKKGKGKKGKKPAAVVAPIEAPPCPPCPEPPKQMQPLDACPESSGPHDV
LRAQPNHYPALLRIPETMAVVGSENGCYDSICKLLRAGFRCAERVFVMAP
WGNYVVFRYHNNNDFIYFLFDGCTCDVNRFRYLDLSCGTAGFLFFDNMHD
VISYIIQSRKTRLYLENLNKIAIDQIVEEYGAVTYTQKAKCMRFAASFLD
H

BO25562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-PA 195 CG12470-PA 1..195 1..195 1070 100 Plus
ms(3)76Cc-PA 1174 CG9392-PA 1018..1151 30..162 287 42.6 Plus