BO25567.complete Sequence
1078 bp assembled on 2010-06-28
GenBank Submission: KX793946
> BO25567.complete
GAAGTTATCAGTCGACATGATGTACTCTAAGGCTGAAGTAGTCCAGGCAG
CGAACATGTCGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGCTTC
GAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACACCCA
GTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATATTCT
ACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTCTTC
GCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCATCAA
GGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGTGCG
CCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCCTTG
TGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTATGT
ATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCCGGG
GCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACAGAG
TTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAA
CGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCATTC
CCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCG
CTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAA
ACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACTGCG
AGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAG
GTTATTGGAGGCGATGTTTTCACTGCCTTGAACAAGGCCTGGTGTGTGCA
CCACTTTGCGTGCTCCGTGTGCGACACGAAGATGACACAAAAATCGAAAT
TCTACGAGTACGACGAGAAGCCGGTGTGCAAAAAGTGCTATGACCGATTT
CCAAACGAACTCAGACGACGTCTGCGCACCGCCCACGAGATGACAATGAA
AAAGAACACCGCAAGCTTTCTAGACCAT
BO25567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1047 | CG7954-PC | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| stck-RB | 1038 | CG7954-PB | 15..1035 | 40..1060 | 5105 | 100 | Plus |
| stck-RD | 1008 | CG7954-PD | 1..1005 | 56..1060 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RC | 1335 | CG7954-RC | 54..1098 | 16..1060 | 5225 | 100 | Plus |
| stck-RD | 1500 | CG7954-RD | 239..1259 | 40..1060 | 5105 | 100 | Plus |
| stck-RB | 1388 | CG7954-RB | 127..1147 | 40..1060 | 5105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 160..465 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 607..866 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359723 | 866..1060 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 466..607 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 40..159 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:51:45 has no hits.
BO25567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:07 Download gff for
BO25567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 47..1090 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:13 Download gff for
BO25567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 55..1098 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:24 Download gff for
BO25567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RC | 55..1098 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:24 Download gff for
BO25567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8359207..8359465 | 608..866 | 100 | -> | Plus |
| 3R | 8359530..8359723 | 867..1062 | 98 | | Plus |
| 3R | 8358649..8358954 | 160..465 | 100 | -> | Plus |
| 3R | 8358382..8358404 | 17..39 | 100 | -> | Plus |
| 3R | 8358471..8358590 | 40..159 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 466..607 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:13 Download gff for
BO25567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184929..4185187 | 608..866 | 100 | -> | Plus |
| arm_3R | 4184104..4184126 | 17..39 | 100 | -> | Plus |
| arm_3R | 4184193..4184312 | 40..159 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 160..465 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 466..607 | 100 | -> | Plus |
| arm_3R | 4185252..4185445 | 867..1062 | 98 | | Plus |
BO25567.pep Sequence
Translation from 16 to 1078
> BO25567.pep
MMYSKAEVVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCA
QCFRPFQDGIFYEFEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSAS
WHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCH
GLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNEL
YCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGH
RHYEKRGLAYCETHYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACS
VCDTKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNTAS
FLDH
BO25567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-PC | 348 | CG7954-PC | 1..348 | 1..348 | 1982 | 100 | Plus |
| stck-PB | 345 | CG7954-PB | 6..345 | 9..348 | 1943 | 100 | Plus |
| stck-PD | 335 | CG7954-PD | 1..335 | 14..348 | 1920 | 100 | Plus |
| stck-PA | 335 | CG7954-PA | 1..335 | 14..348 | 1920 | 100 | Plus |
| Pax-PB | 556 | CG31794-PB | 322..553 | 81..327 | 400 | 32.7 | Plus |
