Clone BO25578 Report

Search the DGRC for BO25578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptRpL36-RA
Protein status:BO25578.pep: Imported from assembly
Sequenced Size:379

Clone Sequence Records

BO25578.complete Sequence

379 bp assembled on 2010-06-28

GenBank Submission: KX795901

> BO25578.complete
GAAGTTATCAGTCGACATGGCAGTGCGCTACGAGCTGGCTATTGGCCTGA
ACAAGGGCCACAAGACCTCGAAGATCAGGAATGTGAAGTACACCGGCGAC
AAGAAGGTCAAGGGTCTGCGCGGATCGCGCTTGAAGAACATCCAAACCCG
CCACACCAAGTTCATGCGCGACTTGGTCCGCGAGGTCGTTGGCCACGCTC
CCTATGAGAAGCGCACCATGGAGTTGCTGAAGGTGTCCAAGGATAAGAGG
GCCCTGAAGTTCCTCAAGCGCCGCCTGGGCACCCACATCCGTGCCAAGAG
GAAGCGTGAGGAGTTGTCCAACATCCTCACCCAGCTGAGGAAGGCCCAGA
CCCACGCCAAGGCAAGCTTTCTAGACCAT

BO25578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-RE 348 CG7622-PE 1..345 17..361 1725 100 Plus
RpL36-RC 348 CG7622-PC 1..345 17..361 1725 100 Plus
RpL36-RD 348 CG7622-PD 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-RE 493 CG7622-RE 22..366 17..361 1725 100 Plus
RpL36-RC 592 CG7622-RC 132..476 17..361 1725 100 Plus
RpL36-RD 535 CG7622-RD 75..419 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 628465..628686 361..140 1110 100 Minus
X 23542271 X 628751..628873 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:50:51 has no hits.

BO25578.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:48 Download gff for BO25578.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RB 88..432 17..363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:53 Download gff for BO25578.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RB 95..439 17..363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:03 Download gff for BO25578.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36-RD 75..419 17..363 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:03 Download gff for BO25578.complete
Subject Subject Range Query Range Percent Splice Strand
X 628463..628686 140..363 99 <- Minus
X 628751..628873 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:53 Download gff for BO25578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 522496..522719 140..363 99 <- Minus
arm_X 522784..522906 17..139 100   Minus

BO25578.pep Sequence

Translation from 16 to 379

> BO25578.pep
MAVRYELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFM
RDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREEL
SNILTQLRKAQTHAKASFLDH

BO25578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36-PE 115 CG7622-PE 1..115 1..115 578 100 Plus
RpL36-PC 115 CG7622-PC 1..115 1..115 578 100 Plus
RpL36-PD 115 CG7622-PD 1..115 1..115 578 100 Plus
RpL36-PB 115 CG7622-PB 1..115 1..115 578 100 Plus
RpL36-PA 115 CG7622-PA 1..115 1..115 578 100 Plus