Clone BO25580 Report

Search the DGRC for BO25580

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG12907-RA
Protein status:BO25580.pep: Imported from assembly
Sequenced Size:505

Clone Sequence Records

BO25580.complete Sequence

505 bp assembled on 2010-06-28

GenBank Submission: KX798483

> BO25580.complete
GAAGTTATCAGTCGACATGCTGTCCTCCGCCACCGCCTCCCTGTCGCCCG
CCGCCCACCTTGTGGCAGAAATTGAACTGCGTTCCGTGCAACCGTTTTGT
GTTCTTCATGATCGGGGCGGGCATCGGATTATTCTGGGACCATATGAAGA
AGGAGGCCCAGAAGGCGGCCGAGGAGGCCGCGAAATCGCCCAAGGAGAAG
GAGAAGGAGGCCAAGGAGCGCGAGAAGAAGCAGAAGGAAAAAGAGAAGGC
CGAAAAGGAGAAGGCGGAGAAGGAGAAGAAGGAGAGGGAGAAGAAGGAGA
AGGAAAAGAAGGAGAAGGAAAAGAAGGAGAAGGAGGCCAAGGGCAAAGAG
AAGGGCAAGGAGGGCAAGTAACGACTATAGACCCCCAAACGGACATGTCA
AGGAGCAGGATGTTTTCCCCCAAAATTCTCATCGAATCCATATCGTTTCT
AAACTTCAAAATTTTCAAGTGCATTATATGGCATACCGCAAGCTTTCTAG
ACCAT

BO25580.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-RB 474 CG12907-PB 1..471 17..487 2355 100 Plus
CG12907-RA 474 CG12907-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-RB 1014 CG12907-RB 181..651 17..487 2355 100 Plus
CG12907-RA 945 CG12907-RA 181..651 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10353551..10354021 17..487 2355 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:50:44 has no hits.

BO25580.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:45 Download gff for BO25580.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 184..654 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:50 Download gff for BO25580.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 184..654 17..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:01 Download gff for BO25580.complete
Subject Subject Range Query Range Percent Splice Strand
CG12907-RA 181..651 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:01 Download gff for BO25580.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10353551..10354021 17..489 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:50 Download gff for BO25580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6241056..6241526 17..489 99   Plus

BO25580.pep Sequence

Translation from 16 to 505

> BO25580.pep
MLSSATASLSPAAHLVAEIELRSVQPFCVLHDRGGHRIILGPYEEGGPEG
GRGGREIAQGEGEGGQGAREEAEGKREGRKGEGGEGEEGEGEEGEGKEGE
GKEGEGGQGQREGQGGQVTTIDPQTDMSRSRMFSPKILIESISFLNFKIF
KCIIWHTASFLDH

BO25580.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12907-PB 157 CG12907-PB 1..157 1..157 826 100 Plus
CG12907-PA 157 CG12907-PA 1..157 1..157 826 100 Plus