BO25584.complete Sequence
2827 bp assembled on 2010-07-15
GenBank Submission: KX799996
> BO25584.complete
GAAGTTATCAGTCGACATGGCGGTCAAGGTGCAATTCGAAATTGGCCACA
CGTCGAAGCTGCGCAGCAAGAAGACACCGCATCCGCAGGCCTTTACGCAC
GACTGGGAGATCTACGTTCAGGGCGTGAACAAGGCGGACATCAGTGCTTT
TGTGGAGAAGGTGGTCTTTGTGCTGCACGAATCCTTTCCGAAACCCAAAC
GAGTGGTCAAGGAACCGCCGTATGCCATTCAGGAGTCCGGCTACGCTGGC
TTCCTACTGCCTGTTGAGATTTACTTTCGCAACCGAGACGAACCCAAGCG
CATTGTTTACCAGTACGACCTGGTACTGCAGTCCACGGGTCCACCGCAGC
ACCACGTCGAGGTAAAGACGCACATTTTCGAGGCGCCGTCGGAGGAGTTT
CGCACGAAACTTATGCGAGGCGGTGGAGTGCCAGTGTTCGGAGCTAACAT
CGGTGCCGGCAGTCTCGCCCGAACGCTTTCGCCCAGTGTTGGCAGCGGTG
AGACAGCGCACAGTAATGAGATGTCTGGTGTCAAAGCCAAAGGCGTACCA
GGTACAATATCCATGAACTCGGATTTAAACACCGGCAAGAAACACAAGTC
GCGCAGCGAGGATCCCGGAAAGAGCAATGCCTTCTCTGCCCTCTTCGGTC
CGCCTATCACGAAGACCAGCGTAACGGCCAACAACATGGCCCAGGTGCCT
GTCTCCAAGCACTCTCCGGAGGCTAAAAGTGCTGCCGTTGGCGGAAAGGG
TGTGTTTCACGAGGGCAGGGAGAAGGCGAGCAAGGATCGCGATAAGTCCA
GCGGCGGAGACAAGCCGCGGGAGAAGGACAAAAAAGATCGGCATGGTCGC
GACAAAGACCGAAAGTCCAGTAAGTCCGGCGATGGCAAGCACGAACGGGA
TAAGGAAAAGTCTAAGAAGGATAAATCACGGGACAAGGAGCGTGAGCGCG
AGCAAGGTTCAGGCAATACCACATCTGCCAACGCCCTTACGGTGGCTACT
TCTGTTGGCACAGCTGGAGGACTGGTTAAGCACACAGCAAGTCCTAAGCC
TGGAAAGCCAAACGAAATGGGTGCGCCCAGTCCCAAGAAGACGGCAAATG
ATTCAGCCGCTGGTGCGGTGGCACCTACTTCCCGTTCCAAAGAGCGCGAT
GAGCACAAGTCCGTCAAATCCGAGTCCAAGGACAAGGAGCGCAGCTCCAG
CAAGAAATCCAAGAAGGATAAAAAGGATAAGGACAAGCAGCGCGATGAGA
GCAAAGACAAGCGAATGCCCAAAGACGAGCGTCCTGGCCAGTCCGACAGT
CCGGCTTCCGGAAACCTTCAATCTGCCCACCTGCAGCAGCAGTCCCAGGT
GGCCAGTACCGGCAAGGCCACGCCCACATCGGTTGGCAGCAATAGCAGCA
GCAGCATGGTCTCGAACATTGGCAAGCAAAAAGAGGAGGCAACGGGAAAG
CATTCCGAAAAGGCCGCAGAATCTAAGGGTGATAAGAGCACAAGCAATGG
AAATGCGACGGACACCAAGAAATCCCACAAGCACAAGAAGAAGGAAAAAA
GCAAGGACAAGGAGAAGGAGCGCAACGATCGGGACAAAGACAAAGACAAG
GAGCGCGACAAGGATAAGCTGAAAGAAAGGGAGAAGGACAAACAGCATGT
GACCGGTTCAGAGAAGTCATCAACGGTCGACCCATCGCCTAAACTAGAGG
GGGCCAGTCCTGCCACCGAGGGAGGGGCACCGGACAAGACCCCTGTTAGT
GCTAGTGCCAGCAGCGGCAGCAAGAAGGAGAAGCACAAAAAGTCCAAGGA
GAAATCCTCTGGGAAGGATGAGAAGCGCCAACGGGAGGCCGTCGATAAGC
AAGCCGATACCAAACACACTGGAAAGTCACAGCAGTCACAGTCGGGTCAG
AGCAAAACGCCCAGCAACCTAGATCTTAGCGATATGGACTCAGCACAGTC
GGCGCCGGATCTTGCCGCCACCAACGCTCTGGCTGCAGCAGCAGCCGCCA
CCCTCCAGCACTCCGACAGTTCCAACAGCAGTTTTCCCGACCTACCCGCC
AGGAGTAGCAGCCAGCAGAAGCCGACGAAGGGCAACACCGGTTCCGGCAA
AGAGACGAAGTCTACTGTCAAGGAACACAAGGGCAAGTCCAAGCAGAACG
ACAAGACGCTCGAGAAGAACACTGACAAGACAGAAAAGCCGGACAAGACT
CCGGACCCCAAGGTGGACAAGTCCGAGAAGTCGGAAAAAGAGGACAAGAA
GCGCAATCGAAGAAGCTCACAAAGTAGTAACAGTGGCAGTGGTGCCGGAG
TCACCGGTGCTTTTATAGAACCCCCTGTTAAGGCCTCGAAAAAGGAGCAG
GGCAAGGCGGCGGGCGAAAAATCCAAGTCGCCCTCGTTGCGTCCACCTAG
AGAAACCAACTCTACAGGCACTGGAGGCGGGACGCCCAATGCCGGAGCCG
GTTTCCTTGCTCCACCATCATCTTCGCCCAGCAACAACCACAGCGCTGCA
GTGGCGGCGAGCTTAAATAATAATAATAATAATAACAACAATAACACGAA
CAGCAACAGCAGCCATTCGCCCGGTGAGATGACGACACCAGGACAGCTCC
AGCTGCCCACGGAGTATTTGAGCGAGCTTCAGGAGCTGCACCACAAGATC
ATGACCCTGCAGGACAATGAGGAGTTGCAACACGTCGTGGAGATGATCGC
GGCCACCGGATGCTACGAGATCACGCACAAGACGTTCGACTTCGACCTGT
GCAAGCTGGACCGCGGCACAGTGCAGCGACTGCAGGAGTTCCTGGCGACG
TCGGTGTCGGCAAGCTTTCTAGACCAT
BO25584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ear-RC | 2796 | CG4913-PC | 1..2793 | 17..2809 | 13950 | 100 | Plus |
| ear-RB | 2838 | CG4913-PB | 1..2793 | 17..2809 | 13950 | 100 | Plus |
| ear-RA | 2796 | CG4913-PA | 1..2793 | 17..2809 | 13950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ear-RC | 3988 | CG4913-RC | 197..2990 | 16..2809 | 13955 | 100 | Plus |
| ear-RB | 3091 | CG4913-RB | 197..2990 | 16..2809 | 13955 | 100 | Plus |
| ear-RA | 3091 | CG4913-RA | 197..2990 | 16..2809 | 13955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15321674..15324281 | 202..2809 | 13025 | 100 | Plus |
| 3R | 32079331 | 3R | 15321417..15321604 | 16..203 | 940 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6915 | 2479..2664 | 145 | 56.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1142 | 2470..2563 | 120 | 61.7 | Plus |
BO25584.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:54 Download gff for
BO25584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 192..2984 | 17..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:35 Download gff for
BO25584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 198..2990 | 17..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:40:56 Download gff for
BO25584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ear-RA | 198..2990 | 17..2811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:40:56 Download gff for
BO25584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15321418..15321604 | 17..203 | 100 | -> | Plus |
| 3R | 15321676..15324281 | 204..2811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:35 Download gff for
BO25584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11147140..11147326 | 17..203 | 100 | -> | Plus |
| arm_3R | 11147398..11150003 | 204..2811 | 99 | | Plus |
BO25584.pep Sequence
Translation from 16 to 2827
> BO25584.pep
MAVKVQFEIGHTSKLRSKKTPHPQAFTHDWEIYVQGVNKADISAFVEKVV
FVLHESFPKPKRVVKEPPYAIQESGYAGFLLPVEIYFRNRDEPKRIVYQY
DLVLQSTGPPQHHVEVKTHIFEAPSEEFRTKLMRGGGVPVFGANIGAGSL
ARTLSPSVGSGETAHSNEMSGVKAKGVPGTISMNSDLNTGKKHKSRSEDP
GKSNAFSALFGPPITKTSVTANNMAQVPVSKHSPEAKSAAVGGKGVFHEG
REKASKDRDKSSGGDKPREKDKKDRHGRDKDRKSSKSGDGKHERDKEKSK
KDKSRDKEREREQGSGNTTSANALTVATSVGTAGGLVKHTASPKPGKPNE
MGAPSPKKTANDSAAGAVAPTSRSKERDEHKSVKSESKDKERSSSKKSKK
DKKDKDKQRDESKDKRMPKDERPGQSDSPASGNLQSAHLQQQSQVASTGK
ATPTSVGSNSSSSMVSNIGKQKEEATGKHSEKAAESKGDKSTSNGNATDT
KKSHKHKKKEKSKDKEKERNDRDKDKDKERDKDKLKEREKDKQHVTGSEK
SSTVDPSPKLEGASPATEGGAPDKTPVSASASSGSKKEKHKKSKEKSSGK
DEKRQREAVDKQADTKHTGKSQQSQSGQSKTPSNLDLSDMDSAQSAPDLA
ATNALAAAAAATLQHSDSSNSSFPDLPARSSSQQKPTKGNTGSGKETKST
VKEHKGKSKQNDKTLEKNTDKTEKPDKTPDPKVDKSEKSEKEDKKRNRRS
SQSSNSGSGAGVTGAFIEPPVKASKKEQGKAAGEKSKSPSLRPPRETNST
GTGGGTPNAGAGFLAPPSSSPSNNHSAAVAASLNNNNNNNNNNTNSNSSH
SPGEMTTPGQLQLPTEYLSELQELHHKIMTLQDNEELQHVVEMIAATGCY
EITHKTFDFDLCKLDRGTVQRLQEFLATSVSASFLDH
BO25584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ear-PC | 931 | CG4913-PC | 1..931 | 1..931 | 4782 | 100 | Plus |
| ear-PB | 945 | CG4913-PB | 1..931 | 1..931 | 4782 | 100 | Plus |
| ear-PA | 931 | CG4913-PA | 1..931 | 1..931 | 4782 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 428..1168 | 155..859 | 299 | 19.4 | Plus |
| dikar-PG | 3080 | CG42799-PG | 921..1627 | 251..843 | 285 | 24.1 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 496..1206 | 155..859 | 276 | 19.2 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 271..885 | 258..861 | 259 | 17.9 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 394..1104 | 155..868 | 257 | 18.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 149..787 | 265..857 | 226 | 19.9 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 763..1312 | 155..714 | 161 | 18.2 | Plus |
