Clone BO25587 Report

Search the DGRC for BO25587

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptNmnat-RA
Protein status:BO25587.pep: Imported from assembly
Sequenced Size:1201

Clone Sequence Records

BO25587.complete Sequence

1201 bp assembled on 2010-06-28

GenBank Submission: KX796289

> BO25587.complete
GAAGTTATCAGTCGACATGATTGTGAAAATCAGCTGGCCCAAGAACAACA
TAACAAGCGAATGCTTCCGGCGGTTTGGATCTTTTAAAAGACGCTCAAAA
TCGAAGAAAATGTCAGCATTCATCGAGGAAACAAAAAGCCTGCTGCCGCG
GATCGCCTTCATAGCCTGCGGATGCTTCAGTCCACCCACACCCATGCACC
TTCGGATGTTCGAGATAGCCAAGGACCACTTCGAAATGCAGGGAACCCAC
AGAGTGGTAGGTGGCATCATCTCGCCCACGCACGACTCATATGGCAAAAA
GGGTCTGGCCTCCGCCTTGGACAGATGTGCCATGGTCAAGCTGGCCACCC
AGAGCTCCAATTGGATTCGGTTGTCCGATTGGGAGGTGCACCAGAATCAG
TGGATGCGCACGCAGGCGGTGCTCCAGCACCACCAGAACTATATCAATAA
CCACATAAATTCCGGCGGGGGAGGCGGAGATGACGGGGAGAACACACATC
TACCCGGATGGCTGCCTCGTGGGTTGCACGACAGTCGGGATCCTGTACAT
CTGAAGCTACTGTGCGGTGCCGATCTGCTGGAGTCCTTTGCTGTTCCAGG
CCTATGGGCAGAGGCCGATATTGAGGACATTGTGGCTAACCATGGTTTGG
TAGTTATCACCCGGGCCGGCTCAAACCCAGGAAAATTCATCTTTGACTCC
GACATATTGACCAAGTATCAGAGCAACATTACGCTAATCACCAACTGGGT
GCCTAATGAGGTGAGCTCCACGTTGATTCGGCGGCTCTTAGGACGCGGCC
AGTCGGTCAAGTACCTTCTAGACGATCTGGTGCTGGAGTACATCAAGCGC
CAACGATTGTTTAACTTTAAATCTAAGTATATAACGGATGCGGTGCGTCC
CAACCATTTGCTCTTTAACCACGCCTATACGGACAACAACAAGAACGCGA
ACAGCTACTCTATAGGCGACCAGCTGGAGCAGGACATGGACGAGTCGGAC
ACTCCAAGCCCGCAACTGCAGCATACGCCTACGTCGCGGGTTTTCTGCTG
CGGGGAGGTGCCTTTACGTGGATCCAAGGTGCTGCGATCCGGTCCTGGAC
AAGCGGTGCAGGTCATCACCATGCAGGCAGATGAGAAAGAGGAGAGCCAA
GCAAAGAAGCAGAAGATTTCCCAAGTGCAACTTGCAAGCTTTCTAGACCA
T

BO25587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nmnat-RA 1170 CG13645-PA 1..1167 17..1183 5835 100 Plus
Nmnat-RC 1077 CG13645-PC 1..1074 110..1183 5370 100 Plus
Nmnat-RB 894 CG13645-PB 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nmnat-RA 1287 CG13645-RA 22..1188 17..1183 5835 100 Plus
Nmnat-RC 1214 CG13645-RC 1..1115 69..1183 5575 100 Plus
Nmnat-RB 1236 CG13645-RB 22..878 17..873 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24945525..24945932 212..619 2040 100 Plus
3R 32079331 3R 24946884..24947154 874..1144 1355 100 Plus
3R 32079331 3R 24945258..24945453 17..212 980 100 Plus
3R 32079331 3R 24946140..24946295 718..873 780 100 Plus
3R 32079331 3R 24945984..24946085 620..721 510 100 Plus
3R 32079331 3R 24947261..24947301 1143..1183 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:50:20 has no hits.

BO25587.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:37 Download gff for BO25587.complete
Subject Subject Range Query Range Percent Splice Strand
Nmnat-RA 22..1188 17..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:41 Download gff for BO25587.complete
Subject Subject Range Query Range Percent Splice Strand
Nmnat-RA 22..1188 17..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:54 Download gff for BO25587.complete
Subject Subject Range Query Range Percent Splice Strand
Nmnat-RA 22..1188 17..1185 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:54 Download gff for BO25587.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24946884..24947154 874..1144 100 -> Plus
3R 24947263..24947301 1145..1185 95   Plus
3R 24946144..24946295 722..873 100 -> Plus
3R 24945258..24945453 17..212 100 -> Plus
3R 24945526..24945932 213..619 100 -> Plus
3R 24945984..24946085 620..721 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:41 Download gff for BO25587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20770980..20771175 17..212 100 -> Plus
arm_3R 20771248..20771654 213..619 100 -> Plus
arm_3R 20771706..20771807 620..721 100 -> Plus
arm_3R 20771866..20772017 722..873 100 -> Plus
arm_3R 20772606..20772876 874..1144 100 -> Plus
arm_3R 20772985..20773023 1145..1185 95   Plus

BO25587.pep Sequence

Translation from 16 to 1201

> BO25587.pep
MIVKISWPKNNITSECFRRFGSFKRRSKSKKMSAFIEETKSLLPRIAFIA
CGCFSPPTPMHLRMFEIAKDHFEMQGTHRVVGGIISPTHDSYGKKGLASA
LDRCAMVKLATQSSNWIRLSDWEVHQNQWMRTQAVLQHHQNYINNHINSG
GGGGDDGENTHLPGWLPRGLHDSRDPVHLKLLCGADLLESFAVPGLWAEA
DIEDIVANHGLVVITRAGSNPGKFIFDSDILTKYQSNITLITNWVPNEVS
STLIRRLLGRGQSVKYLLDDLVLEYIKRQRLFNFKSKYITDAVRPNHLLF
NHAYTDNNKNANSYSIGDQLEQDMDESDTPSPQLQHTPTSRVFCCGEVPL
RGSKVLRSGPGQAVQVITMQADEKEESQAKKQKISQVQLASFLDH

BO25587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nmnat-PA 389 CG13645-PA 1..389 1..389 2061 100 Plus
Nmnat-PC 358 CG13645-PC 1..358 32..389 1897 100 Plus
Nmnat-PB 297 CG13645-PB 1..287 1..287 1526 99.7 Plus