Clone BO25588 Report

Search the DGRC for BO25588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:255
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG18810-RA
Protein status:BO25588.pep: Imported from assembly
Sequenced Size:934

Clone Sequence Records

BO25588.complete Sequence

934 bp assembled on 2010-06-28

GenBank Submission: KX799334

> BO25588.complete
GAAGTTATCAGTCGACATGAGGTTTCGGTCGCTGAAGAACATATGGCCAA
AAGAGAAGTTGGAGCAATTCCTATTTTTGTTCATTTTATGTGGCTTGCCC
GCCATATACTATGTTCTAATGGAGATAATTCTGCCGGAGTTGTCGGATTA
TTGGTCACCTGGTTACGTATTTCAGCTGCTGCTGGGACTGTTCCTCTTTT
CGAATGTGATGTCCAACTATGTCATGTGCATCCTGGTGGACCCCAGCATC
GATCCCAAGCTTATGAAGAATCAGTTGGTGCGCGGACAGCACAGTGAGGA
CTGGCACGAGTGCGACAAGTGCGGGATTCTTGCTCCACCCCGGTCACGTC
ACTGCAGGAAGTGTGGCGTCTGTGTCCTGATGCGAGATCATCACTGCTTC
TTTACTGGTTGCTGCATCGGTCATGAGAACTATAGATACTTTTTCTATTT
TCTTATCTACTTCTTTCTAAGCTGCATGATTTCACTAACGTCATCTTCGA
TATTTATTTACGTTCTGCATGGGGGCAGATACCAGCTCTTTATGCTGACA
CATCCCGCACCGAACTCTGCCTATTTTAACTCGCTTATTATCAGGATAAT
CTACTTTAAGTTGCCCGATATATACGAGCTGGTGTTCACTCTGGTATTCG
TCCTGCTGTGGATCGGGGTATGCGTAGCTACCTATGTGGCTTATGATCAG
TGGTCTCGTGGCTATTTTTGCTATGATTTTGAACTTCAAAACATTCCTTT
TGACCGAAAACTGCGCCGAAACTTCAAGACGTTCTTGGGCAGGCGAATGA
AGTGGACCTGGATCTCCGGATTTGTTCCCAGCCAGCTGGACCACGACGGA
TTTGATCTGGATCCCGACAACGAACGTGTGGCAGATTGGTGCTCAGAAAC
AACCATCAAGGATGGCGCAAGCTTTCTAGACCAT

BO25588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18810-RA 903 CG18810-PA 1..900 17..916 4485 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18810-RA 1168 CG18810-RA 126..1025 17..916 4485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20649037..20649936 17..916 4485 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 08:50:14 has no hits.

BO25588.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:34 Download gff for BO25588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18810-RA 16..915 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:38 Download gff for BO25588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18810-RA 126..1025 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:53 Download gff for BO25588.complete
Subject Subject Range Query Range Percent Splice Strand
CG18810-RA 126..1025 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:53 Download gff for BO25588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20649037..20649936 17..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:38 Download gff for BO25588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20649037..20649936 17..918 99   Plus

BO25588.pep Sequence

Translation from 16 to 934

> BO25588.pep
MRFRSLKNIWPKEKLEQFLFLFILCGLPAIYYVLMEIILPELSDYWSPGY
VFQLLLGLFLFSNVMSNYVMCILVDPSIDPKLMKNQLVRGQHSEDWHECD
KCGILAPPRSRHCRKCGVCVLMRDHHCFFTGCCIGHENYRYFFYFLIYFF
LSCMISLTSSSIFIYVLHGGRYQLFMLTHPAPNSAYFNSLIIRIIYFKLP
DIYELVFTLVFVLLWIGVCVATYVAYDQWSRGYFCYDFELQNIPFDRKLR
RNFKTFLGRRMKWTWISGFVPSQLDHDGFDLDPDNERVADWCSETTIKDG
ASFLDH

BO25588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18810-PA 300 CG18810-PA 1..300 1..300 1664 100 Plus
CG4676-PA 284 CG4676-PA 2..275 1..283 446 35.2 Plus
CG10344-PB 278 CG10344-PB 1..268 1..279 382 28.9 Plus
CG10344-PA 198 CG10344-PA 1..166 1..172 341 36.6 Plus
CG13029-PC 288 CG13029-PC 30..276 22..278 337 31.6 Plus