BO25591.complete Sequence
1180 bp assembled on 2010-06-28
GenBank Submission: KX799833
> BO25591.complete
GAAGTTATCAGTCGACATGGCCACCTTATCGACACACCCCAATTACGGTT
TCCATTTGGGTCAGGCCCAAGGCTTGGAGGACTACGCACCGCAAAGTCAG
CTCCAGCTGAGTCCCGGCATGGACATGGATATCAAGCGTGTGCTGCACTA
CTCCCAAAGCCTGGCAGCCATGGGCGGATCGCCCAATGGACCCGCCGGCC
AGGGTGTGAACGGATCCTCGGGCATGGGTCACCACATGTCCAGTCACATG
ACCCCGCACCACATGCACCAGGCGGTCTCCGCCCAACAGACCTTGTCGCC
CAACAGTTCCATCGGATCCGCCGGCAGTCTGGGTAGCCAGAGCAGCCTGG
GCAGCAATGGCAGTGGTCTCAACTCCAGTTCGGGTCACCAGTCCGCCGGC
ATGCACAGTTTGGCCACATCGCCGGGACAAGAGGGTCACATCAAGCGTCC
AATGAACGCGTTCATGGTCTGGTCCCGCCTGCAGCGTCGTCAGATCGCCA
AGGATAACCCCAAGATGCACAACTCTGAGATCTCCAAGCGCCTGGGTGCC
GAGTGGAAGTTGCTGGCCGAGTCGGAGAAACGACCATTCATCGATGAGGC
CAAGCGCTTGAGGGCCCTGCACATGAAGGAGCACCCGGACTACAAGTACC
GGCCACGCCGCAAGCCCAAGAACCCACTGACCGCTGGACCCCAGGGTGGA
CTGCAGATGCAGGCCGGCGGCATGGGTCAACAGAAGTTGGGAGCTGGACC
GGGAGCTGGAGCCGGAGGCTACAATCCATTCCATCAACTACCGCCATACT
TTGCACCCTCACACCATCTGGATCAGGGTTATCCAGTGCCGTACTTCGGT
GGATTTGACCCACTGGCTCTATCGAAATTGCATCAATCTCAGGCAGCGGC
GGCGGCGGCGGTCAACAATCAGGGTCAGCAGCAAGGACAAGCCCCGCCCC
AATTGCCGCCCACCTCGCTGAGCAGCTTCTACTCGGGCATTTATTCCGGC
ATCTCGGCACCTTCGCTGTACGCCGCACACTCCGCCAATGCCGCCGGACT
CTACCCATCCTCGTCCACCTCCTCGCCGGGATCTTCGCCCGGAACCATCA
CGCCAAATGGTATGGATGGTTCCATGGACAGTGCCCTGAGGCGACCGGTT
CCGGTGCTCTATGCAAGCTTTCTAGACCAT
BO25591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D-RD | 1149 | CG5893-PD | 1..1146 | 17..1162 | 5715 | 99.9 | Plus |
| D-RC | 1149 | CG5893-PC | 1..1146 | 17..1162 | 5715 | 99.9 | Plus |
| D-RB | 1149 | CG5893-PB | 1..1146 | 17..1162 | 5715 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D-RD | 2619 | CG5893-RD | 1207..2352 | 17..1162 | 5715 | 99.9 | Plus |
| D-RC | 1928 | CG5893-RC | 200..1345 | 17..1162 | 5715 | 99.9 | Plus |
| D-RB | 1612 | CG5893-RB | 200..1345 | 17..1162 | 5715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14176193..14177338 | 1162..17 | 5715 | 99.9 | Minus |
| 2L | 23513712 | 2L | 8827031..8827252 | 443..664 | 555 | 83.3 | Plus |
| 3L | 28110227 | 3L | 14106544..14106717 | 610..437 | 315 | 78.7 | Minus |
| 3L | 28110227 | 3L | 14125084..14125194 | 547..437 | 240 | 81.1 | Minus |
| 3L | 28110227 | 3L | 14118630..14118698 | 613..545 | 210 | 87 | Minus |
| 3L | 28110227 | 3L | 14104829..14104889 | 671..611 | 185 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:54:47 has no hits.
BO25591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:30 Download gff for
BO25591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RA | 1207..2352 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:19 Download gff for
BO25591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RB | 200..1345 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:22 Download gff for
BO25591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D-RB | 200..1345 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:22 Download gff for
BO25591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14176191..14177338 | 17..1164 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:19 Download gff for
BO25591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14169291..14170438 | 17..1164 | 99 | | Minus |
BO25591.pep Sequence
Translation from 16 to 1180
> BO25591.pep
MATLSTHPNYGFHLGQAQGLEDYAPQSQLQLSPGMDMDIKRVLHYSQSLA
AMGGSPNGPAGQGVNGSSGMGHHMSSHMTPHHMHQAVSAQQTLSPNSSIG
SAGSLGSQSSLGSNGSGLNSSSGHQSAGMHSLATSPGQEGHIKRPMNAFM
VWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRA
LHMKEHPDYKYRPRRKPKNPLTAGPQGGLQMQAGGMGQQKLGAGPGAGAG
GYNPFHQLPPYFAPSHHLDQGYPVPYFGGFDPLALSKLHQSQAAAAAAVN
NQGQQQGQAPPQLPPTSLSSFYSGIYSGISAPSLYAAHSANAAGLYPSSS
TSSPGSSPGTITPNGMDGSMDSALRRPVPVLYASFLDH
BO25591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D-PD | 382 | CG5893-PD | 1..382 | 1..382 | 2022 | 100 | Plus |
| D-PC | 382 | CG5893-PC | 1..382 | 1..382 | 2022 | 100 | Plus |
| D-PB | 382 | CG5893-PB | 1..382 | 1..382 | 2022 | 100 | Plus |
| D-PA | 382 | CG5893-PA | 1..382 | 1..382 | 2022 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 104..483 | 4..333 | 463 | 37.6 | Plus |
