BO25593.complete Sequence
1450 bp assembled on 2010-06-28
> BO25593.complete
GAAGTTATCAGTCGACATGCCTTTCCGGGCCGAACACAAGGCAGAGGACG
AGAAGGTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAAC
AACAACAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGG
ACCCGATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTG
CGCCCCCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAAC
ATATACACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGT
GGTCAACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTAC
TCGAGCGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGC
GGTCGCAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGA
CTTCGAGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCG
ATCACAAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTT
CCAGATCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAG
CGCCACGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCG
CACTGACCAACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAG
CAGCTGGCCAGGAAGAAGGCGACCAAGGCGAAGGCGGCGGCCAAGCAGCT
GGCGGCTGCCAAGGCCTCTCAGTCCACCGAAAACGGAGCGGAGGGCGATG
GAGCCCAGCAGAACCTCATTCCTAACCCAAATCCCTTTACCACCGAAGAT
TACGGCGTGGCGCTGCTGCACAACACGCTCCAGCTGATCGATATGCACGC
AGAGCTGCAGCTTTCGATGCCGGAGATCAGTGATCTCAGGTTCGAGGAGC
TGGAGACGCTGGTCAAGAGGGATACCTTGCAGCTCAGGTCGGAGGTCACT
CTGTTCGAGTGCCTGGCCACGTGGAGTCTGGCGGAGTGCGCCCGCAAGCA
TATCGATGCCACGCCGGAGAACCGTCGCACTGTCCTCGGTCCACTATGCC
TCACACCTCGTTACTTGCGGATGACCGCCAGCGAATTCCGGCGATGCTGC
GAACGCCTGGAGCTACTGCCACCCACTGAGATATCTCTTATCACCGACGC
CCTCGATGGCAAAAAGCTAAAGAACCTCACCGATCAGCAGGCGGAGCTGC
TGGAGAAGTTCCGCCAGCCGCGTGCCGAATACGCCCGGATGCCCGTCCAC
CTGAGCGACCGGAGCAGTCCGAAGAACTATCCCAAGAAGATGCGGCTGGC
CCACGAGGGTCGGCCCACGGAGGATGGATGCTGGGAGAAGGTGGGAATGA
ACTGTCTCCGCATCTTCGTCTGCATATTTGACGCAAGCTTTCTAGACCAT
BO25593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 1614 | CG8398-PA | 218..1611 | 39..1432 | 6955 | 99.9 | Plus |
| CG8398-RE | 1308 | CG8398-PE | 1..1305 | 128..1432 | 6510 | 99.9 | Plus |
| CG8398-RD | 1308 | CG8398-PD | 1..1305 | 128..1432 | 6510 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RE | 1911 | CG8398-RE | 329..1722 | 39..1432 | 6955 | 99.9 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 512..1905 | 39..1432 | 6955 | 99.9 | Plus |
| CG8398-RC | 1850 | CG8398-RC | 268..1661 | 39..1432 | 6955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6616666..6617316 | 559..1209 | 3240 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6616076..6616600 | 39..563 | 2610 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6617767..6617991 | 1208..1432 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:40 has no hits.
BO25593.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:09:29 Download gff for
BO25593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RD | 58..82 | 17..40 | 92 | -> | Plus |
| CG8398-RD | 766..2157 | 41..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:14 Download gff for
BO25593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 268..1661 | 39..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:19 Download gff for
BO25593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RC | 268..1661 | 39..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:19 Download gff for
BO25593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6609382..6609406 | 17..40 | 92 | -> | Plus |
| 3L | 6616078..6616596 | 41..559 | 100 | -> | Plus |
| 3L | 6616667..6617315 | 560..1208 | 99 | -> | Plus |
| 3L | 6617768..6617991 | 1209..1434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:14 Download gff for
BO25593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602482..6602506 | 17..40 | 92 | -> | Plus |
| arm_3L | 6609178..6609696 | 41..559 | 100 | -> | Plus |
| arm_3L | 6609767..6610415 | 560..1208 | 99 | -> | Plus |
| arm_3L | 6610868..6611091 | 1209..1434 | 99 | | Plus |
BO25593.pep Sequence
Translation from 16 to 1450
> BO25593.pep
MPFRAEHKAEDEKVQITGPEDNQHQQNNNNNDWEPNRMVLPFGLGPDGHH
VDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIVNPYIDFIVVNGDD
RYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQILNVDKNDFELIV
RYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIRELDLRISSATALD
IFKALWFYQGIALTNQHQTVITTQETGQQLARKKATKAKAAAKQLAAAKA
SQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNTLQLIDMHAELQLS
MPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWSLAECARKHIDATP
ENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPTEISLITDALDGKK
LKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKNYPKKMRLAHEGRP
TEDGCWEKVGMNCLRIFVCIFDASFLDH
BO25593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-PA | 537 | CG8398-PA | 69..537 | 4..472 | 2448 | 99.1 | Plus |
| CG8398-PE | 435 | CG8398-PE | 1..435 | 38..472 | 2277 | 100 | Plus |
| CG8398-PD | 435 | CG8398-PD | 1..435 | 38..472 | 2277 | 100 | Plus |
| CG8398-PC | 435 | CG8398-PC | 1..435 | 38..472 | 2277 | 100 | Plus |
