BO25594.complete Sequence
4030 bp assembled on 2010-09-23
GenBank Submission: KX795336
> BO25594.complete
GAAGTTATCAGTCGACATGTCGATATCAAAATTATTCGTGAAAGTATTCA
ACGAGGATATATTCGAGCAGGTGGACCACGATAACCTGTATTCGGATTTG
GACGATGACTTGGAGGGCGCTAATTGCTCGACGGTTCCGGATCCGAGACC
CGCAAAGCTCGCCGATTTATCAGTTACCAAGCAGATGCTCATAGTGCGAA
CCTGGTTAGATGACAAGTTCCAGCAAATCCAGACCGACAGCAATGAAGAG
ATTCGGCGCTTGTACATGGAGACAGAGAGCCGCATTGGCCCGGATCTTAC
CATATTCGATGTGGACTATACGACTACAGTGCGGGTATCCTCGGATCGCC
TAGCCCTGCGCTCCCAGGGCAGCTTCAACACGGTCCGGGCTAATTGTTGC
GTGTACGGCGGTCGCTGGATGTATGAGATCCACCTCCACACTAAGGGCGT
AATGCAGATTGGTTGGGCCTCCAACTCCTGCCAGTTTAACGAAAACAGCG
GGGTGGGAGATACCAAGTCCAGCTATGGATACGATGGCAGCAAACAGCAG
ATCTGGCATATATCCACCAAAAAGTACGGCGACAAATGGCAGATTGGCGA
CGTTATTGGCGTGACTATTGACGTGGATAAGGAAGTGATCGAATATTATC
GAAATGGCCGTTCGATGGGCGTGGCGTTCAACAAGTTGGAAAAGGGTCCG
GGCATCTCCTTCTTCGCAGCCATCTCCTTGGGCTACACGCAGGGCATCGA
GGCGAACTTTGGCAATCGTCCCTTTATGTATCCGGTATCGGGCTTCCAGC
CGCTAATGGCTCGACCTATCCTTAAGCTGCAACGGGCCAACCTGCTGATG
AACTACTTGGTCAACCTCGCTGGCATATTTTCCAAGTATAACGCCCAATC
TGGGATGGCACCAACGAATGGCGCAGATGCCCGCGTTTCCACTAAAAAGA
CCGTGTACTGCATATTTGCCACCTTGCTGATTGAGAAGTTCACCAATGAG
ATATTTGATCCATATATCATCGAAGATGTCCTGCTCAGAAAGATCTCGAG
CATGACAAATTTAGCGTCCGAGAAGGAAAACTCCTACAGCGTACTCCATG
GCTTGTTATCTCTCTTCTGGAACTACATGGAAGGCGACGAGATCAAGTTT
GTGTTGCGGAAGTTGGTGAACGCTTTGCTGGGTACTTTTACGCATACGAT
ACAGGGCCTGGACTATGAGAAGCATCGCCAGGCGCTCGGAATGCTGCATT
GCCTTTGCCTGCACGAACAGACCAGAAAGTATCTGCTGGAAGGAAAGCTG
TTTAAAAAACACTGTCTCGCATTTTTCCTCTACATACATCCACTGGAGTT
CTACATCATGGAGGAACTGCTGCCTGACAGTATGGCCTGGACAGAGGGCA
TCGATGGCCCCAAGGAAAAATATCTGAATGTTGTCGAGAAGGTGCGCAAA
GTTACGGAGCCACTGTATACTGCGCAAAAGGATCTTCTCTGCACGCTGAT
GATCAACTCGGACGGATCAAGGGAAAGTCCGTCAAGCCGCTCAATATTTT
TGAGCAAATTGCGTCGTTACGTAATCGATCTCAGCATGGAGCAAAGGCCC
TTCCACGCCTTTTTCTTTATGCAATCGAGCATTCAGCATCCACTCGATGC
GCCTGTGGCCCTCGCATTTGCTAGCATTCTTATTGATCAGACGCGCTCGA
TGTTCAAAGATGAAATGCCCACAAAGAACGTGGAGGTGAACAGCGATTAT
TTCATAGACGGTACCTTTGACTACATGCACTTTGATCGCGTTGGAGGTGT
CTTGTCACATTTAAGAAAAGTTCATCGGGGCGACATCGATGCTAGGTTGG
GATCCGCTCGAACTCAGCAAATTTATGAAGATGATAGGCAAAACTTGCGG
GTCAATGAAGTGGATACTACGCTTTACCTTTTGGGCGAAAACATAAACAA
TGTGCCCGTAGTGGGACACACTCAGGGCGCCAATAATACAACCTACACTC
ATTTCCTAAATACACGACCCAATAGCAGCACCGACTCCTCGCCGGGCAAC
GCGGATATGGAGGCCAGCCTGTGCGAACTCCTTGATTTGTGTATCATCTT
TTACTACTCGGCAGGCCACAAGTACATAGTAAAGATAGCCACGGTAAGAG
ACGAAATCGCAGCTCTAAATGAAGTACTTAAGGAGACGAAGTTTTACCGG
GAGGATATCGAACGTAAACTTGGGGCATTGGAGCAGCATGCCAATGTCTG
CATGAACGAGAATCACCAGCATGTGATGGGCGAGCTACGGTCTAAGTTCA
GTCAGCGTCAGAATGTTTTTGCTACACGCTCTATTGCCCTGGCAAGGAAG
CAAGTTTGGCTAAGAGGAGTGGCCCTTAACAATCACAGGCGATCCCTGCT
CATATGGCTACTAGAGCGAATGTTACGAACTTTGACGACTGCTTCAAATA
CGGGTTCTCTGTTCTCATTTGTACCTGAGGTGTATGTTAATACACTGCCT
ATTCTGCTGGACGCCGTAATGGACTTTAGTCACCATGATTTGAAAGCTCA
ATTCGAGGCCTCAGATGCGGAATGCAGCGTGAACGCTGCAGCAGAGTTTC
TAGGCATTCACTCAGCAGATCCTCGCATTGTGCTTGCCTCATGCAAAGAC
TCACTGCTGCAAGCTTTGGGAACGCTCACCTGCCACAAGTCCGGAGTGCG
AGCTCTGGAACGTACTTCGAAGAGGTCTCAGGCTAGTCTGGTTCGTGCCT
TGCTACGCCCCTATGAGAACAGAGCTTGGGGCCAGAGCAATTGGCTGCTA
TTGCGCTTTTGGATGGGCGAGGGATATGCCTACAAGGATTCCCGCCAGCC
CTCTGTGTGGCAAGGTGGCTCGCTGCCCCTCCACCAGGGACTGTGTCGCA
GTCGTTCCAGAAACGAGACGCATACAGGATTGCTGCACAATGTCGCTCCC
GCTAATCCCTCAAAGCATTTTCAACGTTTAATCGGCGCCAAATTGTTGGA
GGATGAGCCTTTCGCCACCGCCTTTCTGAACTCGGTGTTGAGCCAACTAA
ACTGGGCTTTTTCCGAATTTATTTTATTGCTGCAGGAGATACAAAACACT
GCTCAGAGGCAGGAAAACACTCTTTTTGAGCCCAAGCAGCTTAAGATATG
CTCCATGTGCTTTGAATTGACTGTTTCGCTGATGCGATGTCTGGAAATGG
TCATCACAACTGCGCCGGAAATCGTCACCGATGAATCTCGTCCAAATAGC
GATCTGCTACTAAATCGCATCTGTCAGTTGATTAGCCAGGTGCTTTCGCG
GGTTACAGTGCCACCCGGATGTTTCCAGTTCGTGGTGGACATGTGCTCGG
CGGACCTAAATGCAGTCACCCACTATCCTATTGTGACTGCTGCTTTGGGT
ATTTTGCTAGCCCTAATGCAGGAAGAGATGGAGAGCGATTTGAGACCTCA
GATTGTAACGCGCGTATCCCGGGCTTTTCTCACCGATCCGAGCTTCCAAT
TTGCCACGCTGGAATTTGCACTGGGAGAAATCCGAACGCCACTGCTGGAG
CAGAAGAATATTCCACGCGGTAATTTCGATCCCTCTTCCAGGCCGCACAT
TGATCCGCTAACAAACGATGTACGTGTGCCGTTGCCTAATAATTCCAAAC
GTATTCGGGCCGATCCGCCAATCCTGAAGTTTGCCCTTAATGATTTTCCC
TCCCATGTTTCCTCTGAAGAAATCGACAATGTCCGCAGGCTTATCGATAG
CCTGCGAGTGAAACAGACTCTGCTTTCCGACATTACACTGCCATCAGAGG
ACTCCCTGTGTCCGATCTGCTGCGCCAAGCCCATCACTGCCGTTTTCACG
CCATGCAAGCATCAGTCCTGCAGCGACTGCATCATGCAGCACATGATGAA
CTCCAAGGTGTGCTTTTACTGTAAGACCACTATACAAACCATTGAGACTC
TGGACGGTACGGTCATCTTTTCCAACGACGATGTAGTCCAGACGCCAATG
ATCGAGCGGGCCGCAAGCTTTCTAGACCAT
BO25594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6752-RB | 3999 | CG6752-PB | 1..3996 | 17..4012 | 19650 | 99.4 | Plus |
| CG6752-RA | 3999 | CG6752-PA | 1..3996 | 17..4012 | 19650 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6752-RB | 4276 | CG6752-RB | 30..4025 | 17..4012 | 19650 | 99.4 | Plus |
| CG6752-RA | 4431 | CG6752-RA | 185..4180 | 17..4012 | 19650 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15194465..15195205 | 1314..574 | 3645 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15192358..15193009 | 3088..2437 | 3230 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15191690..15192298 | 3695..3087 | 3000 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15193262..15193672 | 2323..1913 | 2010 | 99.3 | Minus |
| 3R | 32079331 | 3R | 15191309..15191625 | 4012..3696 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 15193744..15194060 | 1913..1597 | 1555 | 99.4 | Minus |
| 3R | 32079331 | 3R | 15194118..15194401 | 1597..1314 | 1375 | 98.9 | Minus |
| 3R | 32079331 | 3R | 15195558..15195804 | 427..181 | 1190 | 98.8 | Minus |
| 3R | 32079331 | 3R | 15195862..15196026 | 181..17 | 810 | 99.4 | Minus |
| 3R | 32079331 | 3R | 15195264..15195414 | 576..426 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 15193068..15193181 | 2437..2324 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:11 has no hits.
BO25594.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 16:53:23 Download gff for
BO25594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 185..4180 | 17..4014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:58 Download gff for
BO25594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 185..4180 | 17..4014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:01 Download gff for
BO25594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6752-RA | 185..4180 | 17..4014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:01 Download gff for
BO25594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15193744..15194059 | 1598..1913 | 99 | <- | Minus |
| 3R | 15194118..15194400 | 1315..1597 | 98 | <- | Minus |
| 3R | 15191307..15191625 | 3696..4014 | 99 | <- | Minus |
| 3R | 15191690..15192296 | 3089..3695 | 99 | <- | Minus |
| 3R | 15192358..15193008 | 2438..3088 | 99 | <- | Minus |
| 3R | 15193068..15193181 | 2324..2437 | 99 | <- | Minus |
| 3R | 15193262..15193671 | 1914..2323 | 99 | <- | Minus |
| 3R | 15194465..15195205 | 574..1314 | 99 | <- | Minus |
| 3R | 15195267..15195412 | 428..573 | 100 | <- | Minus |
| 3R | 15195558..15195804 | 181..427 | 98 | <- | Minus |
| 3R | 15195863..15196026 | 17..180 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:58 Download gff for
BO25594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11017029..11017347 | 3696..4014 | 99 | <- | Minus |
| arm_3R | 11017412..11018018 | 3089..3695 | 99 | <- | Minus |
| arm_3R | 11018080..11018730 | 2438..3088 | 99 | <- | Minus |
| arm_3R | 11018790..11018903 | 2324..2437 | 99 | <- | Minus |
| arm_3R | 11018984..11019393 | 1914..2323 | 99 | <- | Minus |
| arm_3R | 11019466..11019781 | 1598..1913 | 99 | <- | Minus |
| arm_3R | 11019840..11020122 | 1315..1597 | 98 | <- | Minus |
| arm_3R | 11020187..11020927 | 574..1314 | 99 | <- | Minus |
| arm_3R | 11020989..11021134 | 428..573 | 100 | <- | Minus |
| arm_3R | 11021280..11021526 | 181..427 | 98 | <- | Minus |
| arm_3R | 11021585..11021748 | 17..180 | 99 | | Minus |
BO25594.pep Sequence
Translation from 16 to 4030
> BO25594.pep
MSISKLFVKVFNEDIFEQVDHDNLYSDLDDDLEGANCSTVPDPRPAKLAD
LSVTKQMLIVRTWLDDKFQQIQTDSNEEIRRLYMETESRIGPDLTIFDVD
YTTTVRVSSDRLALRSQGSFNTVRANCCVYGGRWMYEIHLHTKGVMQIGW
ASNSCQFNENSGVGDTKSSYGYDGSKQQIWHISTKKYGDKWQIGDVIGVT
IDVDKEVIEYYRNGRSMGVAFNKLEKGPGISFFAAISLGYTQGIEANFGN
RPFMYPVSGFQPLMARPILKLQRANLLMNYLVNLAGIFSKYNAQSGMAPT
NGADARVSTKKTVYCIFATLLIEKFTNEIFDPYIIEDVLLRKISSMTNLA
SEKENSYSVLHGLLSLFWNYMEGDEIKFVLRKLVNALLGTFTHTIQGLDY
EKHRQALGMLHCLCLHEQTRKYLLEGKLFKKHCLAFFLYIHPLEFYIMEE
LLPDSMAWTEGIDGPKEKYLNVVEKVRKVTEPLYTAQKDLLCTLMINSDG
SRESPSSRSIFLSKLRRYVIDLSMEQRPFHAFFFMQSSIQHPLDAPVALA
FASILIDQTRSMFKDEMPTKNVEVNSDYFIDGTFDYMHFDRVGGVLSHLR
KVHRGDIDARLGSARTQQIYEDDRQNLRVNEVDTTLYLLGENINNVPVVG
HTQGANNTTYTHFLNTRPNSSTDSSPGNADMEASLCELLDLCIIFYYSAG
HKYIVKIATVRDEIAALNEVLKETKFYREDIERKLGALEQHANVCMNENH
QHVMGELRSKFSQRQNVFATRSIALARKQVWLRGVALNNHRRSLLIWLLE
RMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHHDLKAQFEASD
AECSVNAAAEFLGIHSADPRIVLASCKDSLLQALGTLTCHKSGVRALERT
SKRSQASLVRALLRPYENRAWGQSNWLLLRFWMGEGYAYKDSRQPSVWQG
GSLPLHQGLCRSRSRNETHTGLLHNVAPANPSKHFQRLIGAKLLEDEPFA
TAFLNSVLSQLNWAFSEFILLLQEIQNTAQRQENTLFEPKQLKICSMCFE
LTVSLMRCLEMVITTAPEIVTDESRPNSDLLLNRICQLISQVLSRVTVPP
GCFQFVVDMCSADLNAVTHYPIVTAALGILLALMQEEMESDLRPQIVTRV
SRAFLTDPSFQFATLEFALGEIRTPLLEQKNIPRGNFDPSSRPHIDPLTN
DVRVPLPNNSKRIRADPPILKFALNDFPSHVSSEEIDNVRRLIDSLRVKQ
TLLSDITLPSEDSLCPICCAKPITAVFTPCKHQSCSDCIMQHMMNSKVCF
YCKTTIQTIETLDGTVIFSNDDVVQTPMIERAASFLDH
BO25594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6752-PB | 1332 | CG6752-PB | 1..1332 | 1..1332 | 6939 | 100 | Plus |
| CG6752-PA | 1332 | CG6752-PA | 1..1332 | 1..1332 | 6939 | 100 | Plus |
