BO25595.complete Sequence
3694 bp assembled on 2010-07-15
GenBank Submission: KX796029
> BO25595.complete
GAAGTTATCAGTCGACATGACGGTGGATTTCAACGATTATTTTTGGGGGG
AGAAGAACAATGGCTACGATGTTCTGTACCACAACATGAAGTTCGGCCTG
ATTGCCAGCAAGGAGTTATCCGAGTTTCTGCGCGAGAAGTCTAACATTGA
GGAGCAGAACTCAAAGATGATGTCCAAGCTGGCCCACAAGGCTGGTACAC
TAAATAGCACATTCGCTCCTGTTTGGACCATACTGCGAACATCGGCAGAG
AAGCTCTCCACGCTCCACCTGCAGATGGTGCAAAAGCTGACTGAGCTGGT
CAAGGATGTTGCCAAGTATGCCGACGAGCTGCACAAAAAGCACAAATCCG
TCAAGGAGGAGGAATCGCAGACTCTTGAGTGTGTCCAAGCCATCCAGACG
TCGACGGTGGCAGTGCAAAAGTTGCGCGATCTGTACGCCAGCAAGGTCCA
GGAGCTGGAGAAGCTGCGCAAGGACAACGGCTCGCACAAGGATGCCGAGA
AGCTAGAGAGCAAGCTGAAAAAACTGCAGGAGGAGTACAAGGCTTTGTTG
GACAAGCATAACCCCATTAAGAACGAATTTGAGAGACGCATGACACAGAC
CTGCAAGCGCTTTCAAGAGATTGAGGAGGTGCACCTTCGTCAAATGAAGG
AGTTTCTGTCCACGTATCTAGAAATGCTGCAAAACAATCACGATATGGTG
GGTCAAGTACATTCCGACTTTAAGAGGCAGTTTGTCGACATGTCTGTTGA
TAAACTCCTGGAACAGTTTGTGCTCAATAAATACACGGGATTGGAGAAGC
CAGAAATGCCTGAACTGGAGTATGTGGCCTTGTCGAGTGGTTCTCGCCTT
CAACAGCCGCAGGTCTCGGCCAGCGCATCTAACTCCAATTCGGCCACCAG
CATTCAGGCTGCTCTGCGGGCTGGAAATGCAGCAACGACGGCCTCGGGCA
GTGCGGTGTCCATGGATCAACGGGGCGATGCCTTGGCGGCAATCTCTCTG
GGCAGCGGAAGTGCAGCCAGCGGTAGTATACCCTTTGCCGAGGATCCGAT
ACTGGGAGCTATGGGCTCTCCGCGTCCCACATCGCCGGACATGCTGGCGG
GAGCCAATGCATCGGGAATACAATCGCAACCGACTGGTGGAGCCACATCC
ACGGTGAAAAGCCTGCGATCCTGGTTTTTGCCCACTGCCAAACAGCAACC
GTCTGCAGGCGCCGGAAATTTCGGTATGGCCGGAAGTGGCAGCACCAACA
ATACCACCACCACGACAACAGCAAGCAACAATAGCAACAACTTGAACACC
AACAACACAACAGCAACAACTACAACAACAACTGGCACGAATAATCTTAC
CACAAATATCACCAAAAATTCCCCTAATTCGGAGGATACTAGCAATCAAG
ATCAGACACAACAGCAACCGGCAGAGGCCTTAACTCCAACCGCAAGTGCC
ACTGCAATTGCAGCGGCGAGTGCGCCTGGGAAGAAGCAATTGAACGCAAC
GACAAGCGAGCAGCAGCTATCGAAGTCATTAAATGAGCAAGAGCACCTAC
AACAGACTGCAGCAGCTACGGCAGCCACAACTGCAGCAGCAACAACCGCC
ACAACGACAACGTCCAGACGTGCAACGTCACTTTTAAATATATTCACATC
AAACTCTCAGGTCTCTGGCATTTTACGCAGTCGTCGCGACAAGACAAAAA
CCAAAAAGGCTAAGAAAAAGAAAGACAATGAGGCCGCCGAGAACATACAG
GAAGAACGCCTCACCAGCTTGGATCGAGGCAACAACACGCTGCTGGACTA
TGACGACCATGGGCGCAGCATGAAGACGCAGAATTCCAGCGGCAGTAGCG
CTGGCGGTGGCTTGGCCGCCCTATCGGTGACCTCAGCTCAAGGAAGCGTT
GATTCTGCAGGAGCAAGTAGCATGGGCGGAAGCGGAGGTGCGGCAGTGGC
CAGTGGGAGCCTACCCAATGCAGGCGCCCTGACCAACTCGGCTTCGATCA
CAGCTCCGGGCGCCGCAAGTGGGACCGGAACTGGATATGAGGTCGATGAG
GAGGGATTTAGCATACAGCCTGCTAAGGAAATAGCGTGGGAGGAGGGCCA
GGATAAATCTGGCAGCTTCTATTCCGACTCGGATACGGATTCGGACAATG
ACAAACAGGAACGTCGGATCCATGTCAGCATTAAGCCTTTGAAGAATGGT
CAAGCGCCCATGTCGGCCAGCGTGGATGAGCTGCGTGCCACCGTGGAGAA
CATTTCGCTTTCCCCAACTGGAGTTTTTTCACATCACAGCCAGCAGTTGC
AAGCAGCGAGAGGAGCTCCGGCGTCGCGTCAACAGTCGCCGGAAATATCG
AATGCCTCCACTCCCACGGCCAGTGTGCATCCTTATGCCCCGCTGCAGAG
TCCCACGCTGTCCAACAATAATAACGCAAACAACACGACCAACAGTCGTT
ATGCCGATCTGGGCGATATCTTCTCAGAGTTGGGTGACATGAGTATGTCG
GCGCCCTCATCGGCGACGCTGGGAAAACCTCCCGGAAGGCAAATACCAAC
ACCGACGTCAGCGTCAACAGGTGGAAGCATAGCCATACCACGTCCGCCAT
CACGACGCTCTGATATGATTGCCATTGGACCGGCGGCAACAGGGACAGCG
CCAGGTCGCGGCAGAATGTCCCCGGCACCGGTGACGGCCATGAATCGAGC
CGAGAGCATTGGCAGTCTGGAGTTCCGTACGGCTATCGGGGGAGTGGGAT
CCTCGCGAGGCCCCTCTCCACTTACAATCGGTATTTCGGACACTATACCG
CTGGCTGTGGCATTCCACGAAATCATACACGCATATTTTCGGGGCAGCGA
TGAGTCGCGCTGCCAGGTGAAAGTGTCCGGTGATATGATGCTATCATTCC
CAGCTGGCATTGCCGGCCTTTTAGCCAATAATCCAAACCCAGCCAAGCTG
GGTTTTCGCATTAAGCACGTTCAGAATCTGGAAAACCTGGTGCCTAACGG
AAAACTGGTGCAAATAGATCGCCAGCAGTCGAGTTCTGTGAGCACGATGC
TGGAGTTCAATATGGGTGCTTTAACGGCCCTGCTCCGAAGGCAGGCGGAG
AATAACCCGACTGCCTCCTACTTCAACGTGGACATACTCAAGTATCAGGT
GCGCACGAAGCCGGGAGCCAGCTCGTGTCCCTTCCAACTTGTCAGCTACT
GGAAGTGTGAGTCCAGCTACACGGCCCTTAAAGTGGACTACAAGTACAAT
AACCACGCCATGGCCAGTGCCTCGCCCCTTCTGAATGTCACGCTCTCGGT
GCCCGTCAATGGATCTGTGCGCAATGTCCAGTCAAAGCCGCATTCTGCCT
GGTTGGGCGAATCGAATCGTTTGGTGTGGAACTTTACGGACATCTCGCAG
AATTCACAAGACGGCGGAGTGGGGACGCTGCGGGCACGCCTGGAGCTTAA
CGATGGTCCCTCTACACCAGCACTACTGGCCACTCAGTTCAACTGCGAGG
GCACCACACTTTCGGGCATCGAGTTTGAGCTCCAGGGCAGCGGCTATCGC
TTGTCGCTGGTCAAACGGCGCTTCGTTTCTGGAAAATATGTGTGCGAAGG
CGATGGCATTCGCAGTGGAGCCACACCCACGCCTCCGTCGGTCGGGTCCA
CCAGTCCGTACTCGGCGAAGTCAAATGCAAGCTTTCTAGACCAT
BO25595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8176-RF | 3663 | CG8176-PF | 1..3660 | 17..3676 | 18270 | 99.9 | Plus |
| CG8176-RC | 3663 | CG8176-PC | 1..3660 | 17..3676 | 18270 | 99.9 | Plus |
| CG8176-RG | 3486 | CG8176-PG | 1207..3483 | 1400..3676 | 11370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8176-RF | 4726 | CG8176-RF | 430..4089 | 17..3676 | 18270 | 99.9 | Plus |
| CG8176-RC | 4955 | CG8176-RC | 659..4318 | 17..3676 | 18270 | 99.9 | Plus |
| CG8176-RG | 4549 | CG8176-RG | 1636..3912 | 1400..3676 | 11370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9525020..9525753 | 2282..3015 | 3670 | 100 | Plus |
| 3R | 32079331 | 3R | 9522292..9522891 | 801..1400 | 2985 | 99.8 | Plus |
| 3R | 32079331 | 3R | 9521415..9521976 | 46..607 | 2810 | 100 | Plus |
| 3R | 32079331 | 3R | 9524383..9524722 | 1769..2108 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 9525809..9526146 | 3016..3353 | 1690 | 100 | Plus |
| 3R | 32079331 | 3R | 9523534..9523796 | 1399..1661 | 1315 | 100 | Plus |
| 3R | 32079331 | 3R | 9526213..9526444 | 3351..3582 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 9522038..9522235 | 606..803 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 9524781..9524953 | 2109..2281 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 9524201..9524307 | 1661..1767 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 9526500..9526600 | 3576..3676 | 490 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 04:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2664 | 1239..1596 | 344 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2862 | 1231..1638 | 315 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 1386..1599 | 226 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2529 | 1376..1611 | 225 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6827 | 1507..1611 | 206 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6860 | 1496..1611 | 200 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6452..6825 | 1246..1630 | 197 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1042..1189 | 1488..1634 | 197 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2472 | 1432..1596 | 193 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6858 | 1496..1630 | 189 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..7032 | 1304..1630 | 188 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6897 | 1496..1630 | 188 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2432 | 1536..1604 | 171 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2204..2385 | 1437..1611 | 163 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1161 | 1536..1630 | 156 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6785 | 1545..1611 | 143 | 70.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3248..3340 | 1537..1630 | 142 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1587 | 1542..1611 | 140 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5622..5692 | 1548..1618 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2393 | 1565..1652 | 125 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6574 | 1578..1619 | 120 | 76.2 | Plus |
BO25595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:56 Download gff for
BO25595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RC | 323..3982 | 17..3678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:37 Download gff for
BO25595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RC | 323..3982 | 17..3678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:20 Download gff for
BO25595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RC | 659..4318 | 17..3678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:20 Download gff for
BO25595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9523536..9523796 | 1401..1661 | 100 | -> | Plus |
| 3R | 9524202..9524307 | 1662..1767 | 100 | -> | Plus |
| 3R | 9521321..9521350 | 17..46 | 100 | -> | Plus |
| 3R | 9521416..9521976 | 47..607 | 100 | -> | Plus |
| 3R | 9522040..9522235 | 608..803 | 100 | -> | Plus |
| 3R | 9522295..9522891 | 804..1400 | 99 | -> | Plus |
| 3R | 9524382..9524722 | 1768..2108 | 99 | -> | Plus |
| 3R | 9524781..9524953 | 2109..2281 | 100 | -> | Plus |
| 3R | 9525020..9525753 | 2282..3015 | 100 | -> | Plus |
| 3R | 9525809..9526144 | 3016..3351 | 100 | -> | Plus |
| 3R | 9526214..9526443 | 3352..3581 | 100 | -> | Plus |
| 3R | 9526506..9526600 | 3582..3678 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:37 Download gff for
BO25595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5347043..5347072 | 17..46 | 100 | -> | Plus |
| arm_3R | 5347138..5347698 | 47..607 | 100 | -> | Plus |
| arm_3R | 5347762..5347957 | 608..803 | 100 | -> | Plus |
| arm_3R | 5348017..5348613 | 804..1400 | 99 | -> | Plus |
| arm_3R | 5349258..5349518 | 1401..1661 | 100 | -> | Plus |
| arm_3R | 5349924..5350029 | 1662..1767 | 100 | -> | Plus |
| arm_3R | 5350104..5350444 | 1768..2108 | 99 | -> | Plus |
| arm_3R | 5350503..5350675 | 2109..2281 | 100 | -> | Plus |
| arm_3R | 5350742..5351475 | 2282..3015 | 100 | -> | Plus |
| arm_3R | 5351531..5351866 | 3016..3351 | 100 | -> | Plus |
| arm_3R | 5351936..5352165 | 3352..3581 | 100 | -> | Plus |
| arm_3R | 5352228..5352322 | 3582..3678 | 97 | | Plus |
BO25595.pep Sequence
Translation from 16 to 3694
> BO25595.pep
MTVDFNDYFWGEKNNGYDVLYHNMKFGLIASKELSEFLREKSNIEEQNSK
MMSKLAHKAGTLNSTFAPVWTILRTSAEKLSTLHLQMVQKLTELVKDVAK
YADELHKKHKSVKEEESQTLECVQAIQTSTVAVQKLRDLYASKVQELEKL
RKDNGSHKDAEKLESKLKKLQEEYKALLDKHNPIKNEFERRMTQTCKRFQ
EIEEVHLRQMKEFLSTYLEMLQNNHDMVGQVHSDFKRQFVDMSVDKLLEQ
FVLNKYTGLEKPEMPELEYVALSSGSRLQQPQVSASASNSNSATSIQAAL
RAGNAATTASGSAVSMDQRGDALAAISLGSGSAASGSIPFAEDPILGAMG
SPRPTSPDMLAGANASGIQSQPTGGATSTVKSLRSWFLPTAKQQPSAGAG
NFGMAGSGSTNNTTTTTTASNNSNNLNTNNTTATTTTTTGTNNLTTNITK
NSPNSEDTSNQDQTQQQPAEALTPTASATAIAAASAPGKKQLNATTSEQQ
LSKSLNEQEHLQQTAAATAATTAAATTATTTTSRRATSLLNIFTSNSQVS
GILRSRRDKTKTKKAKKKKDNEAAENIQEERLTSLDRGNNTLLDYDDHGR
SMKTQNSSGSSAGGGLAALSVTSAQGSVDSAGASSMGGSGGAAVASGSLP
NAGALTNSASITAPGAASGTGTGYEVDEEGFSIQPAKEIAWEEGQDKSGS
FYSDSDTDSDNDKQERRIHVSIKPLKNGQAPMSASVDELRATVENISLSP
TGVFSHHSQQLQAARGAPASRQQSPEISNASTPTASVHPYAPLQSPTLSN
NNNANNTTNSRYADLGDIFSELGDMSMSAPSSATLGKPPGRQIPTPTSAS
TGGSIAIPRPPSRRSDMIAIGPAATGTAPGRGRMSPAPVTAMNRAESIGS
LEFRTAIGGVGSSRGPSPLTIGISDTIPLAVAFHEIIHAYFRGSDESRCQ
VKVSGDMMLSFPAGIAGLLANNPNPAKLGFRIKHVQNLENLVPNGKLVQI
DRQQSSSVSTMLEFNMGALTALLRRQAENNPTASYFNVDILKYQVRTKPG
ASSCPFQLVSYWKCESSYTALKVDYKYNNHAMASASPLLNVTLSVPVNGS
VRNVQSKPHSAWLGESNRLVWNFTDISQNSQDGGVGTLRARLELNDGPST
PALLATQFNCEGTTLSGIEFELQGSGYRLSLVKRRFVSGKYVCEGDGIRS
GATPTPPSVGSTSPYSAKSNASFLDH
BO25595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8176-PF | 1220 | CG8176-PF | 1..1220 | 1..1220 | 6175 | 100 | Plus |
| CG8176-PC | 1220 | CG8176-PC | 1..1220 | 1..1220 | 6175 | 100 | Plus |
| CG8176-PG | 1161 | CG8176-PG | 1..1161 | 1..1220 | 5496 | 91 | Plus |
| CG8176-PE | 1133 | CG8176-PE | 1..1133 | 1..1220 | 5071 | 85.4 | Plus |
| CG8176-PA | 1133 | CG8176-PA | 1..1133 | 1..1220 | 5071 | 85.4 | Plus |
