BO25620.complete Sequence
1486 bp assembled on 2010-06-28
GenBank Submission: KX795627
> BO25620.complete
GAAGTTATCAGTCGACATGTCTTTCGATCAGAAGGAGATTTTCAGTTTGA
TGTACAAACTGGCTCGGCTAATAGTGCCGGATACTCGAGTTGAATATGAT
TCGATGGGTGCCGTGCACATTCCTCTCGATCGAATGTTCGGTCCGCAAAC
CATGAGATCCCTGATGAAATTTCCAATTGGCGGAGTTGAGGAACGAATGC
CACGACCCCTAATAAAAGCCCTGGGCATAGTGAAGAAATCAGCTGCGGAG
ACGAACAAAATCCATTGTCTGGAGGAGCATCTATGCGATGCCATTTCCAA
GGCCTGCGATGATGTTATATCGGGCAAACTCTATGACGAGGAACACTTTC
CGTTGGTTATATGGCAGGATGGAAGCGGCGAGCACACAAACATGAACGTA
AACGAGGTTATATGCAATCGAGCCATCGAAATTCTGGGCGGTCAGATGGG
CTCCAAGGAGCCGGTGGATCCCAATGAACATGTCAACATGGCGCAAAGTT
CCCATGACACCTTCTCGACAGCCGTGCGCATCGCCGTGGCCATGCAGTTG
CAGGAGACGCTGTATCCCAGCTTAAGGACCTTTATTGATTTGCTGGGCAA
GAAGTCGAACGATTGGATGGATTTGATCAAGATTGGTAGAACGCATCTGA
TGGACGCAGTTCCTCTGTCCCTCGGCCAGGAGTTCAGTGGCTATCAGCAG
CAACTTGTGAACGGAAGGACGCGATTGGACTGTGCCATGTGCCGATTGTA
TCAGTTGCCCATGGGCGGCACCAGTGTGGGCACCAAAGTGGACACCAAGG
CGGAATATTCTGCGCAGTGCATCAAGCGTATAGCCGAGCTAACATTCCTA
CCCTTTGTCGAGTCCCCGAACTTTTTTGAATCCATCTCCGCCTGCGATTG
CCTGGTGGAACTGCACGGTGAACTCAACACGATTGCAGCGAGTGTGATGA
AGATAGCGAATGATATACGATTCCTTGGATCGGGACCACGTTGCGGATTT
GGTGAACTACATCTGCCGGAGAACGAACCAGGTAGTTCCATAATGCCCGG
CAAAGTGAATCCCACGCAATGCGAGGCCATGTCCATGATCTGTGCCCAGG
TGATGGGCAACCATGTGGCCGTCTCCATGGGTGGTTCCTCTGGCCACTTT
CAGCTGAACACCTTTATGCCCATGATTGCCTCCAATGTTTTGCGCTCGAT
TACACTTTTGGGCGATGGCATGAAGTCCTTTTGCACCAATTGCCTCGAGG
GCATCGAGCCCAATAGGAGCAAGATTGGTAGCATCGTCAAGGAGTCCCTG
ATGCTGGTCACTGCCCTCAGTCCACACATTGGCTACGAACGATCCGCTGC
GATCGCCAAGGCAGCGCATCACAATGGAACCACTTTGGAACAGGAGGCCA
TACTTGATGGCATTCAACGGGAGGACTTCAGGGAGTGGGTGCAGCCCAGC
AAGATGCTGGGTCCCGAAGCAAGCTTTCTAGACCAT
BO25620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31874-RA | 1455 | CG31874-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
| CG6140-RB | 1413 | CG6140-PB | 887..1326 | 945..1384 | 610 | 75.9 | Plus |
| CG6140-RA | 1413 | CG6140-PA | 887..1326 | 945..1384 | 610 | 75.9 | Plus |
| CG6140-RB | 1413 | CG6140-PB | 331..484 | 389..542 | 215 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31874-RA | 1623 | CG31874-RA | 73..1524 | 17..1468 | 7260 | 100 | Plus |
| CG6140-RB | 1806 | CG6140-RB | 1082..1521 | 945..1384 | 610 | 75.9 | Plus |
| CG6140-RA | 1652 | CG6140-RA | 928..1367 | 945..1384 | 610 | 75.9 | Plus |
| CG6140-RB | 1806 | CG6140-RB | 526..679 | 389..542 | 215 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10189919..10191184 | 1468..203 | 6330 | 100 | Minus |
| 2L | 23513712 | 2L | 10191239..10191424 | 202..17 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 11464106..11464349 | 1188..945 | 575 | 82.4 | Minus |
| X | 23542271 | X | 6681051..6681362 | 890..1201 | 540 | 78.2 | Plus |
| X | 23542271 | X | 6682989..6683237 | 890..1138 | 510 | 80.3 | Plus |
| 3L | 28110227 | 3L | 11464752..11464905 | 542..389 | 215 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:51:30 has no hits.
BO25620.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 17:10:03 Download gff for
BO25620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1524 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:08 Download gff for
BO25620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1524 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:26:16 Download gff for
BO25620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31874-RA | 73..1524 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:26:16 Download gff for
BO25620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10189917..10191184 | 203..1470 | 99 | <- | Minus |
| 2L | 10191239..10191424 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:08 Download gff for
BO25620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10189917..10191184 | 203..1470 | 99 | <- | Minus |
| arm_2L | 10191239..10191424 | 17..202 | 100 | | Minus |
BO25620.pep Sequence
Translation from 16 to 1486
> BO25620.pep
MSFDQKEIFSLMYKLARLIVPDTRVEYDSMGAVHIPLDRMFGPQTMRSLM
KFPIGGVEERMPRPLIKALGIVKKSAAETNKIHCLEEHLCDAISKACDDV
ISGKLYDEEHFPLVIWQDGSGEHTNMNVNEVICNRAIEILGGQMGSKEPV
DPNEHVNMAQSSHDTFSTAVRIAVAMQLQETLYPSLRTFIDLLGKKSNDW
MDLIKIGRTHLMDAVPLSLGQEFSGYQQQLVNGRTRLDCAMCRLYQLPMG
GTSVGTKVDTKAEYSAQCIKRIAELTFLPFVESPNFFESISACDCLVELH
GELNTIAASVMKIANDIRFLGSGPRCGFGELHLPENEPGSSIMPGKVNPT
QCEAMSMICAQVMGNHVAVSMGGSSGHFQLNTFMPMIASNVLRSITLLGD
GMKSFCTNCLEGIEPNRSKIGSIVKESLMLVTALSPHIGYERSAAIAKAA
HHNGTTLEQEAILDGIQREDFREWVQPSKMLGPEASFLDH
BO25620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31874-PA | 484 | CG31874-PA | 1..484 | 1..484 | 2525 | 100 | Plus |
| CG6140-PB | 470 | CG6140-PB | 8..469 | 22..483 | 1591 | 64.7 | Plus |
| CG6140-PA | 470 | CG6140-PA | 8..469 | 22..483 | 1591 | 64.7 | Plus |
| l(1)G0255-PA | 495 | CG4094-PA | 28..495 | 17..484 | 1531 | 61.6 | Plus |
| l(1)G0255-PB | 467 | CG4094-PB | 7..467 | 24..484 | 1526 | 62.1 | Plus |
