BO25710.complete Sequence
1306 bp assembled on 2010-06-29
GenBank Submission: KX799471
> BO25710.complete
GAAGTTATCAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCA
GCAACAGCAGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTG
GGCAAGATGGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCA
GAGTGACGATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCA
AGGTGGAGGACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGC
GTCGATCAGTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATC
GACACGCCGCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACG
ACGAGCAGTGCCGCCGCATCAACGAGCTGCTGAACAACCCACCATCCGCC
CACCAGCGCGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCT
CAACAACATGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCC
AGATGGGTGGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCC
TCGTCGCGCAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCA
GACGCCCGAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAAT
CGGGCAGCAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGT
GCCGGCTCCTCCGTTGATGCGGATGCCCCCGGTAAGAACTCAACCACATC
GACCACAACGGCGTCAAAATCGACCGGAGCCTATGCCAATCCATTCCAAG
CCTACTTATCCAATCTCTCCCCCGAACATGGCGCAGGACGATCCCTGAAT
ATTGACCTCTCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAAT
TGCCGATCCGGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGG
AGGATGTGGACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCC
CCACAGTTCCAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGC
CCAGCTGGGACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGG
CCGCCGCCTTCTCTGGCAATCTGGAGGATTTTGTGCGTGCTCTGGAGAAG
AGTCTGCCCCCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAA
GAAGGCCAGCGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACA
CAGATCCCGCTACCGAAAAACAGGAGGAGAAGCAAAAGGCAAGCTTTCTA
GACCAT
BO25710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RE | 1275 | CG13349-PE | 1..1272 | 17..1288 | 6300 | 99.7 | Plus |
| Rpn13-RD | 1275 | CG13349-PD | 1..1272 | 17..1288 | 6300 | 99.7 | Plus |
| Rpn13-RG | 1275 | CG13349-PG | 1..1272 | 17..1288 | 6300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RE | 1495 | CG13349-RE | 120..1392 | 16..1288 | 6305 | 99.7 | Plus |
| Rpn13-RD | 1482 | CG13349-RD | 107..1379 | 16..1288 | 6305 | 99.7 | Plus |
| Rpn13-RG | 1495 | CG13349-RG | 120..1392 | 16..1288 | 6305 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13958648..13959398 | 1288..538 | 3710 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13959568..13960089 | 537..16 | 2595 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:18 has no hits.
BO25710.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:40 Download gff for
BO25710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-RE | 113..1378 | 23..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:38 Download gff for
BO25710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 127..1392 | 23..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:09 Download gff for
BO25710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RG | 127..1392 | 23..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:09 Download gff for
BO25710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13958644..13959398 | 538..1290 | 99 | <- | Minus |
| 2R | 13959568..13960082 | 23..537 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:38 Download gff for
BO25710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846149..9846903 | 538..1290 | 99 | <- | Minus |
| arm_2R | 9847073..9847587 | 23..537 | 99 | | Minus |
BO25710.pep Sequence
Translation from 16 to 1306
> BO25710.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTAS
KSTGAYANPFQAYLSNLSPEHGAGRSLNIDLSTALPGADAINQIIADPEH
VKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSAQLGPV
IKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEKKASDP
ETPTSVARDENTDPATEKQEEKQKASFLDH
BO25710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-PE | 424 | CG13349-PE | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PD | 424 | CG13349-PD | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PG | 424 | CG13349-PG | 1..424 | 1..424 | 2181 | 100 | Plus |
| Rpn13-PF | 389 | CG13349-PF | 1..389 | 1..424 | 1955 | 91.7 | Plus |
| Rpn13-PB | 389 | CG13349-PB | 1..389 | 1..424 | 1955 | 91.7 | Plus |
