BO25711.complete Sequence
1252 bp assembled on 2010-11-18
GenBank Submission: KX797455
> BO25711.complete
GAAGTTATCAGTCGACATGTCCTCGTCCAACCGCAGCACCACGCCAACAG
GCAGCGAAATGGACGAGGACGAAATGGTGGTCACGGAGTCGGAGGATAGC
AACGACTCCTGGACCACCGAGGAGTTTAGCTCGGAGTTTATCATGCGCTA
CGGCAGCAGGCATTCCGGTGGTGGAAGCAATGGCACGCCCGGCAATGAGA
AACCCTTCGCCTGCCCTGTTCCGGGATGCAAAAAACGTTACAAGAACGTC
AACGGCATCAAGTACCATTCGAAGAACGGTCACAAAAAGGACGGAAGAGT
GCGCAAGGGCTACAAGTGTCACTGCGGTAAGAGTTACAAAACGGCCCAGG
GCCTGAAGAACCACGCGCTGCACACACACAACTCGCAGCCGGATAGTGTG
CTGAATGCCCAGCTGGCCAATGCGTTGGCCATAGGCGATGGGGCCAGCGC
GGCCACGCCTGTGGGCAGCAGCAACACCTCCTCCAATCCGAACCCGCCGC
CCATCATTCAGCGCAGCAACTCGCCGTCTCAGTCGCTGGGCTCGTTGAGT
CCGTCGAGCATCAGCAACATGTCGAGCAGCGCCAGCAGTTGCCATGGAGG
CAGCGGCAGTCTGTCGAACGGGAATAATGGCAACAATGGGAGCACTACTA
GCAACACTGCCATTCTCACTAGCAACGGGAATGTCCTGCAGCAGCTCAGT
GCCGGGAATGTGGTCACCCTGACCAATCTTCCCACGCAACAGCATCAGCA
GCAACAGCCGCAGCCGCAACAGCAGCAGCAGCAGCAACTCCATCAAAACA
CTGCAACAGAAACCTCTTACTCCTGCTCAAACAACAGCAACCTCAGCAAT
CCCAACAGTAACCACGGCAGCAGCGATTCCAGCAAGCCGCCCACGACTCT
CCTGTCCGTTAACAAGAGGTCCACAGCAATCGCTTCAGCGAAACTGCCAA
CCACCGGCAATTCCCTGCCCATGCAGATCTCACCCAACTTCATTGAGCAC
AAGTATTCCGCGCTGGACATGAAGGAGAAGTTCTTCTTGAATCTGAGGGC
CGGCAAAGCGGTGGCCAGTTCACAGGGAGCCGATAGAATGGGCTCACCAA
TGGGACACCAATCGGATGTTGGCATTTCCGGCGGATCAGGAGCAGGCGGT
GGCTTGCGGGCGGTTGCTGTGGGTCAAATGTGCGCGCTGCAAAACGAGCA
CATTCACCAAAATCTCTTCAAGAAAACGATCAACGCAAGCTTTCTAGACC
AT
BO25711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12054-RF | 1551 | CG12054-PF | 331..1548 | 17..1234 | 6030 | 99.7 | Plus |
| CG12054-RE | 1551 | CG12054-PE | 331..1548 | 17..1234 | 6030 | 99.7 | Plus |
| CG12054-RB | 1221 | CG12054-PB | 1..1218 | 17..1234 | 6030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12054-RF | 2408 | CG12054-RF | 925..2142 | 17..1234 | 6030 | 99.7 | Plus |
| CG12054-RE | 4280 | CG12054-RE | 925..2142 | 17..1234 | 6030 | 99.7 | Plus |
| CG12054-RB | 2259 | CG12054-RB | 776..1993 | 17..1234 | 6030 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31226565..31227078 | 296..809 | 2540 | 99.6 | Plus |
| 3R | 32079331 | 3R | 31228694..31229121 | 807..1234 | 2125 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31226364..31226503 | 158..297 | 685 | 99.3 | Plus |
| 3R | 32079331 | 3R | 31226139..31226250 | 49..160 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2533 | 736..959 | 285 | 61.5 | Plus |
BO25711.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-18 11:32:48 Download gff for
BO25711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RB | 776..1993 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:08 Download gff for
BO25711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RB | 776..1993 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:58 Download gff for
BO25711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12054-RB | 776..1993 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:58 Download gff for
BO25711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31226043..31226076 | 17..50 | 100 | -> | Plus |
| 3R | 31226141..31226249 | 51..159 | 100 | -> | Plus |
| 3R | 31226366..31226503 | 160..297 | 99 | -> | Plus |
| 3R | 31226567..31227078 | 298..809 | 99 | -> | Plus |
| 3R | 31228697..31229121 | 810..1236 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:08 Download gff for
BO25711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27051765..27051798 | 17..50 | 100 | -> | Plus |
| arm_3R | 27051863..27051971 | 51..159 | 100 | -> | Plus |
| arm_3R | 27052088..27052225 | 160..297 | 99 | -> | Plus |
| arm_3R | 27052289..27052800 | 298..809 | 99 | -> | Plus |
| arm_3R | 27054419..27054843 | 810..1236 | 99 | | Plus |
BO25711.pep Sequence
Translation from 16 to 1252
> BO25711.pep
MSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSEFIMRYGSRHS
GGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHKKDGRVRKGYK
CHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIGDGASAATPVG
SSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSASSCHGGSGSLS
NGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPTQQHQQQQPQP
QQQQQQQLHQNTATETSYSCSNNSNLSNPNSNHGSSDSSKPPTTLLSVNK
RSTAIASAKLPTTGNSLPMQISPNFIEHKYSALDMKEKFFLNLRAGKAVA
SSQGADRMGSPMGHQSDVGISGGSGAGGGLRAVAVGQMCALQNEHIHQNL
FKKTINASFLDH
BO25711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12054-PB | 406 | CG12054-PB | 1..406 | 1..406 | 2123 | 100 | Plus |
| CG12054-PF | 516 | CG12054-PF | 111..516 | 1..406 | 2123 | 100 | Plus |
| CG12054-PE | 516 | CG12054-PE | 111..516 | 1..406 | 2123 | 100 | Plus |
| CG12054-PA | 628 | CG12054-PA | 111..413 | 1..308 | 1409 | 89.9 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 461..836 | 2..376 | 165 | 23.5 | Plus |
