BO25713.complete Sequence
2263 bp assembled on 2010-12-13
GenBank Submission: KX798000
> BO25713.complete
GAAGTTATCAGTCGACATGGAAAAGAAGTCCTGGGTTGCACCGCTTACCT
CGTTCACCAACAGTAACGCAAGTAACGAAGACAGAGCCCGCAACTCGGGA
TCGTTAAACCAAGATGGGGAGCCAAGGTCCGTGCCTCACCCAACGGTTCC
GGCTAAGAAGTGCACATGTCCAACCTGCGCTTGCCAACGTAATGACCATA
AATCCAATCCGGTACCCCCTCCCCCTCAATCACGCAAGCCTGTAGCCGAG
CCGGAAAGCCCCCATGATACAGTCAATGACGAGGACAGTTTGAAGGACTT
GAGACGTTCGACGGACCAATCCCACAAGAGCGCTCACATAGCCTTGGAGA
AGAATGAGGACTCGGGTTTTGTGATCGAGCAGGTGGTTGATACGCACAAA
TATTCGTCGGATGAAGAAGAGGAGGAGGCGACGATGGGTCGCATTTTCGG
AGTCTCCGGTCCGGTGGTCAATGCCGAGGAGATGGCCGGCGCAGCCATGT
ACGAGCTGGTTCGCGTCGGACACTCCCAGCTAGTTGGTGAGATCATTCGA
CTGGAGGGTGATATGGCCACCATTCAGGTTTACGAGGATACTTCGGGTGT
GAGCGTGGGTGATCCCGTCTACCAGACGGGAAAGCCGCTCTCCGTTGAAT
TGGGACCCGGCATCATGGGCAGCATCTTCGATGGTATCCAGCGACCATTG
AGGTCCATCAGTGAACTAACCAACTCCATATACGTGCCCAAGGGCATCGA
TACGCCCTCCCTGCCCAGGAACATTGCGTACGAATTCACACCCGGAAAAT
TGAAGATCGATGCTCTGATCACCGGCGGAGACATCTACGGATCTGTTTTC
GAAAACAGCATGATGCACGATCACCGCCTGATACTACCGCCCCGCACCAA
GGGGCGCATCCGGTGGTTGGCCCCGCCCGGGAACTACTGCGTGGACGAGG
TGATCGTGGAGACGGAGTTCAACGACGAGATCACCAAGCACACCATGCTC
CAGGTGTGGCCCGTACGGAGGTGTCGTCCGGTGGAGGATAAGCTCCCCAG
CAATTCACCACTCTTGACTGGCCAGCGCGTCCTGGACGCCTTCTTTCCAT
GTGTCCAGGGCGGAACCACTGCCATTCCAGGAGCGTTTGGATGTGGAAAG
ACCGTCATCTCACAGGCCCTGTCCAAATACTCCAACTCAGATGTCATCAT
CTACGTGGGCTGCGGTGAGCGCGGGAACGAAATGTCCGAGGTTCTTCGGG
ACTTTCCGCAGCTTGAGGTTGAGGTCAATGGCACCATGGAATCGATTATG
AAGCGGACTGCCCTGGTGGCCAATACCTCCAATATGCCGGTGGCTGCCCG
AGAAGCCTCGATCTACACGGGCATCACCCTCTCGGAATACTTCCGCGACA
TGGGCTACCATGTGTCCATGATGGCGGACTCCACATCTCGATGGGCGGAG
GCGCTGCGTGAGATTTCCGGACGTCTGGCCGAGATGCCTGCCGATGCTGG
CTATCCGGCTTACTTGGGAGCTCGGCTGGCCTCCTTCTACGAGAGAGCCG
GACTGGTGAAGTGCCTGGGCAGTCCAGATCGTGAGGGATCCGTGTCCATT
GTGGGAGCTGTGTCGCCTCCCGGTGGCGACTTCTCTGATCCCGTGACCTC
CGCCACCCTGAGCATCGTTCAGGTCTTTTGGGGTCTGGACAAGAAGCTGG
CCCAGAGGAAACACTTTCCATCGGTGAACTGGCTGCAATCGTACTCCAAG
TACATGCGCACTTTGGACACTTACTACGAGGAATCCAATCCGGAGTTTAC
GCATCTGCGAGCTAAGGCCAAGAAGGTGCTGCAGGAGGAGGATGACCTGG
CGGAAATTGTCCAACTGGTGGGCAAGTCGTCGTTGAACGAGGAGGACAAG
ATCACCCTTGAGGTGGCCAAGATGCTGAAGGACGATTTCCTGCAGCAGAA
CTCCTACAGTCAGTACGATGCCTACTGCCCCTTCTTCAAGACCATTGGCA
TGCTGAAGAACATGATGACCTTCTATGATGCGGCGATCCTGTCGGTGCAG
AACACGGCGGACAATGAGGCGCGTGTAACTTGGGGCTTGATCCGTATAAA
AGCCGCTAACATTCTGTACGAGCTCTCCACCATGAAGTTCATTGATCCCA
AGCTGGGCGAAGCGACTGTCCTGGAGAGCATGAACAAGCTGCATGACAAT
ATCCTTTCAACTTTCCGGGAGATAGAGGATAATGTCGAGGACTATGCAAG
CTTTCTAGACCAT
BO25713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha68-3-RA | 2232 | CG5075-PA | 1..2229 | 17..2245 | 11055 | 99.7 | Plus |
| Vha68-2-RF | 1845 | CG3762-PF | 529..1622 | 920..2013 | 1900 | 78.2 | Plus |
| Vha68-2-RE | 1845 | CG3762-PE | 529..1622 | 920..2013 | 1900 | 78.2 | Plus |
| Vha68-2-RF | 1845 | CG3762-PF | 64..356 | 452..744 | 460 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha68-3-RA | 2445 | CG5075-RA | 115..2343 | 17..2245 | 11055 | 99.7 | Plus |
| Vha68-2-RF | 2528 | CG3762-RF | 674..1767 | 920..2013 | 1900 | 78.2 | Plus |
| Vha68-2-RE | 2474 | CG3762-RE | 620..1713 | 920..2013 | 1900 | 78.2 | Plus |
| Vha68-2-RF | 2528 | CG3762-RF | 209..501 | 452..744 | 460 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12978900..12980049 | 17..1166 | 5660 | 99.5 | Plus |
| 2L | 23513712 | 2L | 12980110..12981191 | 1164..2245 | 5410 | 100 | Plus |
| 2L | 23513712 | 2L | 12976929..12977779 | 1163..2013 | 1630 | 79.4 | Plus |
| 2L | 23513712 | 2L | 13001675..13002539 | 2028..1164 | 1535 | 78.5 | Minus |
| 2L | 23513712 | 2L | 12976121..12976405 | 460..744 | 420 | 76.5 | Plus |
| 2L | 23513712 | 2L | 13003056..13003321 | 729..464 | 385 | 76.3 | Minus |
| 2L | 23513712 | 2L | 13002621..13002831 | 1167..957 | 320 | 76.8 | Minus |
| 2L | 23513712 | 2L | 12976578..12976824 | 920..1166 | 290 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:40 has no hits.
BO25713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:47 Download gff for
BO25713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..2343 | 17..2247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:50 Download gff for
BO25713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..2343 | 17..2247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:11 Download gff for
BO25713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..2343 | 17..2247 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:11 Download gff for
BO25713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12978900..12980048 | 17..1165 | 99 | -> | Plus |
| 2L | 12980112..12981191 | 1166..2247 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:50 Download gff for
BO25713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12978900..12980048 | 17..1165 | 99 | -> | Plus |
| arm_2L | 12980112..12981191 | 1166..2247 | 99 | | Plus |
BO25713.pep Sequence
Translation from 16 to 2263
> BO25713.pep
MEKKSWVAPLTSFTNSNASNEDRARNSGSLNQDGEPRSVPHPTVPAKKCT
CPTCACQRNDHKSNPVPPPPQSRKPVAEPESPHDTVNDEDSLKDLRRSTD
QSHKSAHIALEKNEDSGFVIEQVVDTHKYSSDEEEEEATMGRIFGVSGPV
VNAEEMAGAAMYELVRVGHSQLVGEIIRLEGDMATIQVYEDTSGVSVGDP
VYQTGKPLSVELGPGIMGSIFDGIQRPLRSISELTNSIYVPKGIDTPSLP
RNIAYEFTPGKLKIDALITGGDIYGSVFENSMMHDHRLILPPRTKGRIRW
LAPPGNYCVDEVIVETEFNDEITKHTMLQVWPVRRCRPVEDKLPSNSPLL
TGQRVLDAFFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCG
ERGNEMSEVLRDFPQLEVEVNGTMESIMKRTALVANTSNMPVAAREASIY
TGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADAGYPAYL
GARLASFYERAGLVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLSI
VQVFWGLDKKLAQRKHFPSVNWLQSYSKYMRTLDTYYEESNPEFTHLRAK
AKKVLQEEDDLAEIVQLVGKSSLNEEDKITLEVAKMLKDDFLQQNSYSQY
DAYCPFFKTIGMLKNMMTFYDAAILSVQNTADNEARVTWGLIRIKAANIL
YELSTMKFIDPKLGEATVLESMNKLHDNILSTFREIEDNVEDYASFLDH
BO25713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha68-3-PA | 743 | CG5075-PA | 1..743 | 1..743 | 3869 | 100 | Plus |
| Vha68-2-PF | 614 | CG3762-PF | 8..614 | 132..738 | 2407 | 75.2 | Plus |
| Vha68-2-PE | 614 | CG3762-PE | 8..614 | 132..738 | 2407 | 75.2 | Plus |
| Vha68-2-PD | 614 | CG3762-PD | 8..614 | 132..738 | 2407 | 75.2 | Plus |
| Vha68-2-PC | 614 | CG3762-PC | 8..614 | 132..738 | 2407 | 75.2 | Plus |
