BO25719.complete Sequence
2140 bp assembled on 2010-07-15
GenBank Submission: KX799849
> BO25719.complete
GAAGTTATCAGTCGACATGACTATGGAGGATCGCAATCGCATCTGGACCA
CGGGCAACATTAACCATGGCTTCTTTGGCGACAATCTGCAGCAGCAGCCG
TTGCCCCTGCAGAGATTGCAGACACCAGGTAACCTCAGCCTTCTTTCGGC
ACCGATTCGAGCCAATGGCAGTGGCAATGGAAACGCAACTGCCAATGGAC
ATGGACAGAATTCGGCCACGGAGAGTGCGAATGGAAAGCAGCTGCCATAC
GAGCCCATATCCCCAAACCTAATTGGCATACAATCCAAGTTTCGTCGGAG
TTATTACCACAAAGTGGTGCTTGGCGGACTGCTGGCCCTTGTAATTATTC
TGCTGATAGCAATCATAGTCATAAGCCTAGGCCTTAAGAAATCCAGCTCA
ATTTGCCGTAGCAAGGAGTGCCTCCGCACAGCGGCCAGCCTCATCTATGC
GATGGACGAGCAGACTGATCCCTGCGAGGACTTTTACCAATTCACCTGCG
GCAGGTGGGCCAACGAGCATCCGCGTCCGGATTCGGTGACCTCGAACGAT
TGGTTCCGGGAGCGTCAGGCGCACATAATGCGTGTGGTCCGCGAGTTCCT
CCGCTCGAATATTACCAAATCGGAACCAGAAGCAGTGGGCAAGGCAAAGA
CTATGTACAGAGCCTGCATGGATACGAAGCTGCTGGATAAGCGTGATCTG
GAGCCGCTGATAAACTATCTGCTGCGTTTTGGACTACCCGTTCTGCCCTC
CGCCTTGAATCTCACCCTGGGAAGTGGTTCCAAATATGCCACAGAGGCAG
CCAATGTCAAATACAACTGGCTGCAGTCCATTGTTTCCATTAAACAACAC
CTCACCATGGACCTCATCATAGGATTCGATGTCTTTCCGGATCCTTTCAA
CCGCACCATCAACCGCATTGCCCTGGGAACTCCAGAGACTGATTCGGCGT
TTCCTTTCAACAACGACGACTCCCACAAAATGCTCCGTAAGATCCATCGC
AAGACCATTTTTATGCAAAACAGCGATGATGAGGACGACAGCGAGGATGA
CCGGGAGAGCGAGGAGGAGGAGGCAGCCAAGCAGACTAGCACGGGAATGA
CCGCCTATCTGCATTACGTCCGGAAAGTGATCGAAAAGTATCTGCTCTAC
GTGGATCCGAATGTTAACCAGGAGGAGGCCACTCTGGGCATCACCGAGTT
GGTCAAACAGGGTGTTCGAGTAGCAAGAAAAGTGCATGAGTTCAAGGAGG
AGGCTGAAAACATGACCAAGCCATCGAAGAACCCGGCAGATGACATTGTC
TACATCACCCTGCAGGATCTGCAGAACCAAACTGACAAGAATATAGCACC
CAAGACACTGCCCATCTGGGTTCGTTACATGGAATTGATTCTAAAGGGCA
CACGCCACGCCGGCAATATCCAAATGACCCAGAATCTGACAATAATAACC
AGCCAGGCAGACATTACGTATCTGCAGAACATTGTGGAGTATCTTGACGA
CACTCCAGCTTCCCATATCGAATCATACCTGTTTCTCAGCACCATCGAGG
AGCTGGTCCTGCATACATCGAGTTCGATGCGATTGCTTCACTCAGAGTAT
ATGCGGGTGGCCATTGGAACAGAGGGCAGCACGCCGAGATCCCTCTACTG
CGCAAATGGTGTAAACAGTTTGCTCGGAATGGCAGTGAGCTATGTCCTGG
CCGACGCGGACTTCACCAAGGAAAAGCTGCCTAAAGTTGAGCGGATGCTG
AGTGATATACGACGCTCCTTCGATCGCCTGGTAAAGTCCACCTCTTGGAT
GGATGCAGCTACCAAGCGGAAAACCATTCAAAAGTCAGCTGAGATGAAGA
GCTTTATCGGATTTCCCCCTTGGCTGCGAAATGCCAGCGTATTAAATGCC
TATTACGAGGGGGCAGAGGTGAATGCCAGCACCCACCTGGAGAACCTCAT
GGACTTTGTCCACTGGCAGATGATGGACAAACTGAACGAAATGGATAAGC
CAGAGCCCATTGGCTGGGCCACTTCCCCTTCAAATGTCAATGCGTTTCAT
ACGTTTCAATCGAATGCAATCACTGTGCCCATTGCCATTCTGCAATACCC
GTTTTACGACCTTGGTCTCGAGGCAAGCTTTCTAGACCAT
BO25719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep5-RD | 2649 | CG6265-PD | 1..2108 | 17..2124 | 10285 | 99.2 | Plus |
| Nep5-RF | 2109 | CG6265-PF | 1..2106 | 17..2122 | 10275 | 99.2 | Plus |
| Nep5-RC | 2109 | CG6265-PC | 1..2106 | 17..2122 | 10275 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep5-RD | 3366 | CG6265-RD | 385..2495 | 14..2124 | 10300 | 99.2 | Plus |
| Nep5-RF | 3946 | CG6265-RF | 806..2914 | 14..2122 | 10290 | 99.2 | Plus |
| Nep5-RC | 3525 | CG6265-RC | 385..2493 | 14..2122 | 10290 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27059365..27060198 | 2072..1239 | 4020 | 98.8 | Minus |
| 3R | 32079331 | 3R | 27060603..27061176 | 957..384 | 2795 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27060258..27060540 | 1240..958 | 1385 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27061397..27061561 | 290..126 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 27063277..27063394 | 131..14 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 27061241..27061335 | 383..289 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 27059070..27059119 | 2122..2073 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 1769..1801 | 1001..1033 | 120 | 84.8 | Plus |
BO25719.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:01:13 Download gff for
BO25719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RC | 388..2493 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:50 Download gff for
BO25719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RD | 388..2495 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:22 Download gff for
BO25719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RD | 388..2495 | 17..2124 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:22 Download gff for
BO25719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27059068..27059119 | 2073..2124 | 96 | <- | Minus |
| 3R | 27059365..27060196 | 1241..2072 | 98 | <- | Minus |
| 3R | 27060258..27060540 | 958..1240 | 99 | <- | Minus |
| 3R | 27060603..27061176 | 384..957 | 99 | <- | Minus |
| 3R | 27061241..27061335 | 289..383 | 100 | <- | Minus |
| 3R | 27061399..27061558 | 129..288 | 100 | <- | Minus |
| 3R | 27063280..27063391 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:50 Download gff for
BO25719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22885980..22886262 | 958..1240 | 99 | <- | Minus |
| arm_3R | 22885087..22885918 | 1241..2072 | 98 | <- | Minus |
| arm_3R | 22884790..22884841 | 2073..2124 | 96 | <- | Minus |
| arm_3R | 22886325..22886898 | 384..957 | 99 | <- | Minus |
| arm_3R | 22886963..22887057 | 289..383 | 100 | <- | Minus |
| arm_3R | 22887121..22887280 | 129..288 | 100 | <- | Minus |
| arm_3R | 22889002..22889113 | 17..128 | 100 | | Minus |
BO25719.pep Sequence
Translation from 16 to 2140
> BO25719.pep
MTMEDRNRIWTTGNINHGFFGDNLQQQPLPLQRLQTPGNLSLLSAPIRAN
GSGNGNATANGHGQNSATESANGKQLPYEPISPNLIGIQSKFRRSYYHKV
VLGGLLALVIILLIAIIVISLGLKKSSSICRSKECLRTAASLIYAMDEQT
DPCEDFYQFTCGRWANEHPRPDSVTSNDWFRERQAHIMRVVREFLRSNIT
KSEPEAVGKAKTMYRACMDTKLLDKRDLEPLINYLLRFGLPVLPSALNLT
LGSGSKYATEAANVKYNWLQSIVSIKQHLTMDLIIGFDVFPDPFNRTINR
IALGTPETDSAFPFNNDDSHKMLRKIHRKTIFMQNSDDEDDSEDDRESEE
EEAAKQTSTGMTAYLHYVRKVIEKYLLYVDPNVNQEEATLGITELVKQGV
RVARKVHEFKEEAENMTKPSKNPADDIVYITLQDLQNQTDKNIAPKTLPI
WVRYMELILKGTRHAGNIQMTQNLTIITSQADITYLQNIVEYLDDTPASH
IESYLFLSTIEELVLHTSSSMRLLHSEYMRVAIGTEGSTPRSLYCANGVN
SLLGMAVSYVLADADFTKEKLPKVERMLSDIRRSFDRLVKSTSWMDAATK
RKTIQKSAEMKSFIGFPPWLRNASVLNAYYEGAEVNASTHLENLMDFVHW
QMMDKLNEMDKPEPIGWATSPSNVNAFHTFQSNAITVPIAILQYPFYDLG
LEASFLDH
BO25719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep5-PD | 882 | CG6265-PD | 1..703 | 1..703 | 3645 | 100 | Plus |
| Nep5-PF | 702 | CG6265-PF | 1..702 | 1..702 | 3641 | 100 | Plus |
| Nep5-PE | 702 | CG6265-PE | 1..702 | 1..702 | 3641 | 100 | Plus |
| Nep5-PC | 702 | CG6265-PC | 1..702 | 1..702 | 3641 | 100 | Plus |
| Nep3-PC | 786 | CG9565-PC | 103..605 | 130..699 | 367 | 21.5 | Plus |
