BO25729.complete Sequence
1531 bp assembled on 2010-06-29
GenBank Submission: KX797716
> BO25729.complete
GAAGTTATCAGTCGACATGTCTACGTCTACGGCGGCCGCCAATTTGCTAA
AAACAGTGGAGGAAACCTTTTCCGGTTACAATAGCGGCGATGAGCATCAT
CAGCCCAAAGAGCGATTGATTCCAGTGGAAGAGTGGCAGCGACGTGATCT
GGAGTTCGCCAAATGTATGGAACAGCGCGGCTACGAACTTAAGCCTGTCG
AGGAGGATGGCGCCTGCCTGTTTCGCTCTATATCCCTTCAAATATACGGC
GACGAGGAGATGCACGACGTGATCCGCCAACACACTATGGATTATATACA
CGAGAATCGGGAATATTTCGGTCAGTTTGTCACCGAGGACATCAACAGCT
ATATACAGCGTAAACGGGCTCGTGATGCTCATGGCAACCACATTGAGATC
CAAGCTATTTCCGAGATCTACAGCCGTACCGTCGAGGTATACTGCTACCA
GTCAAATCCCATCAATATATTTAACTCGGAACAGTCGCAGGCGGGTTATC
CCCCGCTGCGTTTATCCTATCAGCGCGGATCACACTACAATGCTATTCTG
GATCCCTACAACGCCACCGTTGGCGTGGGCCTGGGCTTGGCTGGATACAA
GCCCGAGATCCAAACCAAAGAGGCTGTGCGTCTCAGCGAGCAGTTGGAGA
TCGAACAGACCATGTTTGAAGATAAACTAAAGACAACAGACTGGGAGGCC
ACTAACGAAGCCATTGAGGAGCAAATTGCTCGCGAGTCTTACCTACAGTG
GTGTCGCGAGAATACGCAACGCTCGCGCAACAGCAATACAGCGGCAGGAT
CGGCCACATCCTCGACGGTTACCTCTGCAGAAGCGCTTACCGACTCCGAT
GCCTCGCCCTCAAAATACTCTGCGTGTGGGGGCACTGGCAGCAGCGGTAA
TCCACCTGTGGCTTTGACCAGCGGTAGTGGTGGTGATGGCGCCGGACCCG
CGTTTTCGCTGTCGCCCAAAACACTTAACCAGTTTAGTCACAAGCTACCG
CAAGAGGTTAACGAGCTGGGTGGCTACGATAGCGATGCAACAGACATGAG
TAGCACCAGCTCGGTGGGACACAGCGGTGGCAGTTCATCGCCGAGCACAG
CTGCAAGCCAACGTTCGGGCAAGGGATCCAAGTCTCAACGTCGCGCTACG
GCCCTCAGAAAGAAGCGACGACACGAAACTCGCGAGACGACTTTGGCTAG
CAAGAGCGCCGAGGCTTTAGAGGCTCCGCTGAGGAAGAGTCCAAAGCGCG
ATTCAGCGCCATCAGTGGCACGAGCTGACACGCCAGAGGCTGAGCAGCGT
CCCTCCACCTCGAAGCAGTCGTCTCATTCGCCACAGAAGAACGTGGATAG
CAAGTCACCTACGGAGCAGAGTTACTCTAGCTTTTATCAGGAGCTGCTCG
AGGCATCCTACGCCAATGAAGGCGCTAACGAAAGCGAGATGCTGCAGCAA
GCCATCCAGATGTCCACACGCGATTACATGGAGGACCAAAAACGAAAGTT
TCTCTTCGGACCGGCAAGCTTTCTAGACCAT
BO25729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 1980 | CG6091-PF | 481..1977 | 17..1513 | 7470 | 99.9 | Plus |
| CG6091-RE | 1980 | CG6091-PE | 481..1977 | 17..1513 | 7470 | 99.9 | Plus |
| CG6091-RD | 1500 | CG6091-PD | 1..1497 | 17..1513 | 7470 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 3179 | CG6091-RF | 1012..2508 | 17..1513 | 7470 | 99.9 | Plus |
| CG6091-RE | 3276 | CG6091-RE | 1109..2605 | 17..1513 | 7470 | 99.9 | Plus |
| CG6091-RD | 2167 | CG6091-RD | 353..1849 | 17..1513 | 7470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11606536..11607085 | 1206..657 | 2735 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11607652..11607933 | 298..17 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 11606256..11606473 | 1422..1205 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 11607144..11607346 | 658..456 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 11607435..11607591 | 455..299 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 11606107..11606200 | 1513..1420 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:27:06 has no hits.
BO25729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:43:58 Download gff for
BO25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RF | 987..2483 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:00 Download gff for
BO25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 353..1849 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:37 Download gff for
BO25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RD | 353..1849 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:37 Download gff for
BO25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11606257..11606471 | 1207..1421 | 100 | <- | Minus |
| 3L | 11606105..11606198 | 1422..1515 | 97 | <- | Minus |
| 3L | 11606536..11607083 | 659..1206 | 99 | <- | Minus |
| 3L | 11607144..11607346 | 456..658 | 100 | <- | Minus |
| 3L | 11607435..11607591 | 299..455 | 100 | <- | Minus |
| 3L | 11607652..11607933 | 17..298 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:00 Download gff for
BO25729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11599205..11599298 | 1422..1515 | 97 | <- | Minus |
| arm_3L | 11599357..11599571 | 1207..1421 | 100 | <- | Minus |
| arm_3L | 11599636..11600183 | 659..1206 | 99 | <- | Minus |
| arm_3L | 11600244..11600446 | 456..658 | 100 | <- | Minus |
| arm_3L | 11600535..11600691 | 299..455 | 100 | <- | Minus |
| arm_3L | 11600752..11601033 | 17..298 | 100 | | Minus |
BO25729.pep Sequence
Translation from 16 to 1531
> BO25729.pep
MSTSTAAANLLKTVEETFSGYNSGDEHHQPKERLIPVEEWQRRDLEFAKC
MEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIRQHTMDYIHENREY
FGQFVTEDINSYIQRKRARDAHGNHIEIQAISEIYSRTVEVYCYQSNPIN
IFNSEQSQAGYPPLRLSYQRGSHYNAILDPYNATVGVGLGLAGYKPEIQT
KEAVRLSEQLEIEQTMFEDKLKTTDWEATNEAIEEQIARESYLQWCRENT
QRSRNSNTAAGSATSSTVTSAEALTDSDASPSKYSACGGTGSSGNPPVAL
TSGSGGDGAGPAFSLSPKTLNQFSHKLPQEVNELGGYDSDATDMSSTSSV
GHSGGSSSPSTAASQRSGKGSKSQRRATALRKKRRHETRETTLASKSAEA
LEAPLRKSPKRDSAPSVARADTPEAEQRPSTSKQSSHSPQKNVDSKSPTE
QSYSSFYQELLEASYANEGANESEMLQQAIQMSTRDYMEDQKRKFLFGPA
SFLDH
BO25729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-PF | 659 | CG6091-PF | 161..659 | 1..499 | 2570 | 100 | Plus |
| CG6091-PE | 659 | CG6091-PE | 161..659 | 1..499 | 2570 | 100 | Plus |
| CG6091-PD | 499 | CG6091-PD | 1..499 | 1..499 | 2570 | 100 | Plus |
| CG6091-PG | 568 | CG6091-PG | 161..556 | 1..396 | 2052 | 100 | Plus |
