Clone BO25737 Report

Search the DGRC for BO25737

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:257
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG42707-RB
Protein status:BO25737.pep: Imported from assembly
Sequenced Size:679

Clone Sequence Records

BO25737.complete Sequence

679 bp assembled on 2010-06-29

GenBank Submission: KX794125

> BO25737.complete
GAAGTTATCAGTCGACATGGATTCGAATTGCGATTTATCGATGGTCAATG
GTCAAACGGAGCCCAAAGACCCAAAATGGGCGTCGTCGTCAACCCAGATA
ACTTCTCGGGCATCGGAAACCTTTTCCGGAGTTGGCTCGGCGATAAGCAC
TGAAACGTCCTTGCAGCCAGTGGCCGCGCCCACGATGTACTGCCTCCGAT
TGGCGCAGCAGAGGCCGATAACCGAACGGCACGTCCACTTTCATGCCGGC
GTTATCGATAACGAGCACATGAACCGGCGCAAATCGAAATGCTGCTGCAT
CTATCGAAAGCCACATCCTTTCGGCGAGAGTTCGTCCTCCACGGACGACG
AGTGCGAACACTGCTTTGGTCATCCCGAAGTGAGAACTCGCAATCGGTTG
GAAAAACAGCGGATACAGGAACAGCAAAACGGGTGCAGTTGCTGTCATCA
TCACCATCGACTTCATAGTAATCGGAATAATCGACCGCCTACCGAAGAGA
TCGCGCAGCATAAGGATGATCTGGCCAAAGAGGAACCAAAATCGGTAGTC
AACAATGAAAGTAGTCTAAAACTTTTAAACGAGGAAAATGTAAAATCATC
TAAACCAGAAAAAAAAAATAATTCAAATAACCGCCTCGAAGTAACTTTTG
TAGAGCTTGATGCAAGCTTTCTAGACCAT

BO25737.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-RB 648 CG42707-PB 1..645 17..661 3195 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-RB 813 CG11233-RB 86..730 17..661 3195 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20881897..20882541 661..17 3195 99.7 Minus
Blast to na_te.dros performed 2014-11-26 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1203..1249 582..631 107 74 Plus

BO25737.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:43:56 Download gff for BO25737.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)19Ec-RB 86..730 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:46 Download gff for BO25737.complete
Subject Subject Range Query Range Percent Splice Strand
I-3-RB 86..730 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:03 Download gff for BO25737.complete
Subject Subject Range Query Range Percent Splice Strand
I-3-RB 86..730 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:03 Download gff for BO25737.complete
Subject Subject Range Query Range Percent Splice Strand
X 20881895..20882541 17..663 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:46 Download gff for BO25737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20752922..20753568 17..663 99   Minus

BO25737.pep Sequence

Translation from 16 to 679

> BO25737.pep
MDSNCDLSMVNGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQ
PVAAPTMYCLRLAQQRPITERHVHFHAGVIDNEHMNRRKSKCCCIYRKPH
PFGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLH
SNRNNRPPTEEIAQHKDDLAKEEPKSVVNNESSLKLLNEENVKSSKPEKK
NNSNNRLEVTFVELDASFLDH

BO25737.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
I-3-PB 215 CG11233-PB 1..215 1..215 1163 100 Plus
CG13994-PB 163 CG13994-PB 6..147 30..167 278 43.1 Plus
CG13994-PA 163 CG13994-PA 6..147 30..167 278 43.1 Plus