BO25739.complete Sequence
1225 bp assembled on 2010-06-29
GenBank Submission: KX796850
> BO25739.complete
GAAGTTATCAGTCGACATGGAAAACCCAATAAACTTCAAGGATATACCCT
CCGAGATGCCGCAGCCAAAGCGCATTCAACTTGAGGGCGAGACTTCGGTG
GCCGAAGCCATAAACTTCCTGAAGACGCAATGCGATACGCGCAAGGAGCA
CAAGCCTGAGGAGTTTCAGCAGGATGGACCAACCGTAGCGGACGAGTTAA
ACGCTCGCCTGGCCATGGTTCATGTGCGCGAGACTCGTGCCAAACGCATT
CGCCGCTTAGTTAAGTTTTCCCCCAATGAGACGCAAGCATTGTACAGGTT
CATCTGTGTCTGTCCCCGCTACCATCCTTGCTATGTGCCCTGCCAACACA
CGGGACAAATAATCATCGACCGGGACGTGTTGTCCCGCGAGGAACACATA
TGTTTTCTAGCTACACCCAAGAAGGACTTCTCCTCACCCCAGTTGGCCAA
ACAGGCGCGCTACTACACCAAAAAGATCTACGTTAACCAATGTACAGCAC
GGGTTGAACGACTTGCCGATCCTCACCCAATGCGAGTGAGTGACACATAC
AATTTCTTTAAGGACTACCTCTCGCCTCGTCATATAGCGGCTCTAGAGAA
CCAGATGAAACCCAAACCTCCGGTAGAAGCCATGTCAATGGAGAAGGCGC
TGGAATACATGGAGGAGGAGATGCGTCAGCGCAAGGCAGCGAAGCGTGTC
CAAAAGCGACGATGCAAGGGTCTAAAAAAACGAATCATTTTGCGCCAGCG
CAAGCAGATGCAAAAGATAATTTGCGTACTGTTCGAGGAAATGAAGGACT
TTCTACTCAACGATCAGTTTATTGTTGACGAGAACTCCCCTCTATGTTGC
GTAATTCTTGAGAGACTTCGAGAATTTACAGATCAAGAATTCTATACGAC
AAGTAATTTGCAAGAGTATCAGAGGATATTGGCCAACAACCTAACCGTTT
GGGTCAACAAGTTCATATCAAACTTAAACATTTACTTGACACCTCAGCAA
ATACCTGTAAAACGACAGATGATGGCAGAGAACGATCCCGAACAGTTTGT
GCCCTTGTCAGATTTCATTTCTGTATCCGATGAGGCGGATGCAGAGGAAA
TGATGAACGATGTCGAGCACGGAGCCGCTGAATATGACGACTATGGATAT
GGGGAGGACTACTTGCCCGACGTTCTCAATACGGATATATCGGAGGAAAC
AATAATCGCAAGCTTTCTAGACCAT
BO25739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1194 | CG14098-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| Rcd7-RA | 1194 | CG14098-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-RB | 1466 | CG14098-RB | 80..1271 | 16..1207 | 5960 | 100 | Plus |
| Rcd7-RA | 1827 | CG14098-RA | 441..1632 | 16..1207 | 5960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19546131..19546716 | 296..881 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 19546771..19547098 | 880..1207 | 1640 | 100 | Plus |
| 3L | 28110227 | 3L | 19545683..19545966 | 16..299 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:09 has no hits.
BO25739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:43:54 Download gff for
BO25739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14098-RB | 81..1271 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:27 Download gff for
BO25739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 442..1632 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:31 Download gff for
BO25739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd7-RA | 442..1632 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:31 Download gff for
BO25739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19545684..19545964 | 17..297 | 100 | -> | Plus |
| 3L | 19546133..19546716 | 298..881 | 100 | -> | Plus |
| 3L | 19546773..19547098 | 882..1209 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:27 Download gff for
BO25739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19538784..19539064 | 17..297 | 100 | -> | Plus |
| arm_3L | 19539233..19539816 | 298..881 | 100 | -> | Plus |
| arm_3L | 19539873..19540198 | 882..1209 | 99 | | Plus |
BO25739.pep Sequence
Translation from 16 to 1225
> BO25739.pep
MENPINFKDIPSEMPQPKRIQLEGETSVAEAINFLKTQCDTRKEHKPEEF
QQDGPTVADELNARLAMVHVRETRAKRIRRLVKFSPNETQALYRFICVCP
RYHPCYVPCQHTGQIIIDRDVLSREEHICFLATPKKDFSSPQLAKQARYY
TKKIYVNQCTARVERLADPHPMRVSDTYNFFKDYLSPRHIAALENQMKPK
PPVEAMSMEKALEYMEEEMRQRKAAKRVQKRRCKGLKKRIILRQRKQMQK
IICVLFEEMKDFLLNDQFIVDENSPLCCVILERLREFTDQEFYTTSNLQE
YQRILANNLTVWVNKFISNLNIYLTPQQIPVKRQMMAENDPEQFVPLSDF
ISVSDEADAEEMMNDVEHGAAEYDDYGYGEDYLPDVLNTDISEETIIASF
LDH
BO25739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd7-PB | 397 | CG14098-PB | 1..397 | 1..397 | 2088 | 100 | Plus |
| Rcd7-PA | 397 | CG14098-PA | 1..397 | 1..397 | 2088 | 100 | Plus |
