BO25753.complete Sequence
2308 bp assembled on 2010-08-02
GenBank Submission: KX798744
> BO25753.complete
GAAGTTATCAGTCGACATGGTACGCACTAAAAACCAGTCGTCCTCCTCCA
GCGCCAGCAGCAGCAGCACCAAGTCACCAATAAAGTCCAGCAGCGGGGCA
GGATCATCCGGCGGAGGACTCGGTGGTCGCCAGTCCACTCACCGCTCGTC
GAGCGCCTCAAACGTTGCTGCCGTTGTTGCCGGCGGTTCATCTGCCGCCG
GTGGAGGCTCCTCATCGAATCGCCGTAGTCCGGGCAGCTCACCCGACGGC
GACGACGACACCACCACCACAGATGACCTGACCCCCACAACGTGCTCCCC
ACGCAGCGGCCACCACCATTCGTACGGCGGCTACTCGTCCTCTGTGCACA
AACAGAACCTCTACGTCGTCTCGTTCCCCATAATCTTTCTTTTCAACGTT
CTGCGCTCGCTGATTTATCAGCTGTTTTGTATTTTTCGCTACCTATACGG
TGCGAGCACAAAGGTGATATACCGCCCGCACCGACGCGACTGTAATATTG
AAATCGTGGTGCAGAATTCCTCCAAGGAGCAACAGCAGTCGTTGAACCAT
CCTTCGGAGCTGAACCGTGAAGGTGACGGACAGGAACAGCAGTTATCCAA
TCAGCCACAGCGTTTCAGGCCCATTCAACCGTTGGAGATGGCCGCCAATC
GTCCGGGAGGAGGGTATTCACCTGGTCCCGGCGATCCATTGCTGGCCAAG
CAGAAGCATCACCATCGACGCGCCTTCGAGTACATCTCCAAGGCGCTCAA
AATTGATGAGGAGAACGAAGGTCACAAAGAGCTGGCAATTGAGCTCTACC
GAAAAGGTATCAAGGAGCTAGAGGATGGCATAGCTGTCGATTGCTGGAGT
GGACGTGGTGATGTGTGGGATCGGGCTCAGCGCCTGCACGACAAGATGCA
GACAAACCTTTCGATGGCGCGGGATCGTCTCCATTTTCTAGCTCTGCGTG
AGCAGGATTTGCAAATGCAGCGCCTCTCCTTAAAGGAGAAGCAGAAAGAA
GAGGCTCAAAGCAAGCCGCAGAAGACCAGGGAGCCCATGCTGGCAGGAAT
GACCAACGAACCAATGAAACTAAGGGTGCGCAGCAGTGGCTATGGGCCCA
AGGCCACCACCAGTGCCCAACCCACTGCATCTGGCCGCAAACTGACAATT
GGATCCAAACGACCCGTCAACTTGGCCGTGGCCAACAAATCACAAACGCT
GCCCCGCAACCTTGGCTCCAAAACATCTGTAGGCGCAGTCCAAAGGCAAC
CAGCCAAGACAGCTGCAACGCCTCCCGCCGTTCGGCGACAATTTTCTTCG
GGGCGTAATACGCCGCCCCAGCGTTCGCGGACTCCCATAAACAACAACGG
ACCCAGTGGCAGTGGCGCCAGCACTCCGGTGGTTAGTGTGAAGGGAGTGG
AACAGAAGCTGGTGCAACTTATACTCGACGAGATCGTCGAGGGTGGGGCC
AAAGTGGAGTGGACTGACATTGCCGGTCAGGATGTGGCCAAGCAGGCTCT
ACAGGAAATGGTCATTCTACCCTCCGTCCGACCGGAACTCTTTACGGGGC
TTCGTGCACCGGCTAAGGGTTTATTGCTGTTTGGTCCTCCCGGAAATGGC
AAGACACTGCTGGCCCGCGCCGTGGCTACTGAGTGTAGTGCCACCTTCCT
GAACATTTCGGCTGCCTCGCTGACCAGCAAGTACGTGGGGGATGGCGAGA
AACTGGTGAGGGCTCTCTTCGCCGTGGCCCGTCACATGCAGCCCTCCATT
ATTTTCATCGACGAGGTGGACTCGTTGCTTTCAGAGCGAAGCAGCAGCGA
GCATGAAGCATCGCGTCGCCTAAAGACCGAGTTTCTAGTGGAGTTCGATG
GGCTGCCTGGAAATCCAGACGGAGACAGGATCGTGGTGCTGGCCGCCACC
AATCGACCGCAGGAATTGGACGAGGCAGCCCTGCGTCGGTTCACAAAGCG
CGTTTACGTCTCACTGCCCGACGAGCAAACCCGCGAGCTGCTCCTCAATC
GACTGCTCCAGAAGCAAGGCAGTCCGTTGGATACCGAGGCGTTGCGTCGC
CTTGCAAAGATAACAGACGGATACTCGGGCTCCGACTTAACGGCACTGGC
CAAGGACGCCGCATTGGAGCCCATTCGAGAGTTGAATGTGGAGCAAGTGA
AATGTCTGGACATCAGTGCAATGCGTGCAATCACAGAGCAGGACTTTCAC
AGTTCGCTCAAGCGCATCAGGCGCTCGGTGGCGCCGCAAAGCCTCAACTC
ATATGAGAAGTGGTCGCAAGATTATGGCGACATCACCATCGCAAGCTTTC
TAGACCAT
BO25753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spas-RB | 2277 | CG5977-PB | 1..2274 | 17..2290 | 11355 | 100 | Plus |
| spas-RA | 2277 | CG5977-PA | 1..2274 | 17..2290 | 11355 | 100 | Plus |
| spas-RD | 2091 | CG5977-PD | 925..2088 | 1127..2290 | 5805 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spas-RB | 2791 | CG5977-RB | 295..2568 | 17..2290 | 11355 | 100 | Plus |
| spas-RA | 3601 | CG5977-RA | 295..2568 | 17..2290 | 11355 | 100 | Plus |
| spas-RD | 3743 | CG5977-RD | 1219..2382 | 1127..2290 | 5805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24038509..24039264 | 17..772 | 3780 | 100 | Plus |
| 3R | 32079331 | 3R | 24040878..24041621 | 1547..2290 | 3705 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24040568..24040821 | 1295..1548 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 24039909..24040096 | 940..1127 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 24039593..24039765 | 769..941 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 24040301..24040472 | 1123..1294 | 845 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:40:40 has no hits.
BO25753.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:38 Download gff for
BO25753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RB | 292..2565 | 17..2292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:41 Download gff for
BO25753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RA | 295..2568 | 17..2292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:48 Download gff for
BO25753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spas-RA | 295..2568 | 17..2292 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:48 Download gff for
BO25753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24038509..24039262 | 17..770 | 100 | -> | Plus |
| 3R | 24039595..24039765 | 771..941 | 100 | -> | Plus |
| 3R | 24039911..24040096 | 942..1127 | 100 | -> | Plus |
| 3R | 24040306..24040472 | 1128..1294 | 100 | -> | Plus |
| 3R | 24040568..24040820 | 1295..1547 | 100 | -> | Plus |
| 3R | 24040879..24041621 | 1548..2292 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:41 Download gff for
BO25753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19864231..19864984 | 17..770 | 100 | -> | Plus |
| arm_3R | 19865317..19865487 | 771..941 | 100 | -> | Plus |
| arm_3R | 19865633..19865818 | 942..1127 | 100 | -> | Plus |
| arm_3R | 19866028..19866194 | 1128..1294 | 100 | -> | Plus |
| arm_3R | 19866290..19866542 | 1295..1547 | 100 | -> | Plus |
| arm_3R | 19866601..19867343 | 1548..2292 | 99 | | Plus |
BO25753.pep Sequence
Translation from 16 to 2308
> BO25753.pep
MVRTKNQSSSSSASSSSTKSPIKSSSGAGSSGGGLGGRQSTHRSSSASNV
AAVVAGGSSAAGGGSSSNRRSPGSSPDGDDDTTTTDDLTPTTCSPRSGHH
HSYGGYSSSVHKQNLYVVSFPIIFLFNVLRSLIYQLFCIFRYLYGASTKV
IYRPHRRDCNIEIVVQNSSKEQQQSLNHPSELNREGDGQEQQLSNQPQRF
RPIQPLEMAANRPGGGYSPGPGDPLLAKQKHHHRRAFEYISKALKIDEEN
EGHKELAIELYRKGIKELEDGIAVDCWSGRGDVWDRAQRLHDKMQTNLSM
ARDRLHFLALREQDLQMQRLSLKEKQKEEAQSKPQKTREPMLAGMTNEPM
KLRVRSSGYGPKATTSAQPTASGRKLTIGSKRPVNLAVANKSQTLPRNLG
SKTSVGAVQRQPAKTAATPPAVRRQFSSGRNTPPQRSRTPINNNGPSGSG
ASTPVVSVKGVEQKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVI
LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA
SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR
RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSL
PDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL
EPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWS
QDYGDITIASFLDH
BO25753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spas-PB | 758 | CG5977-PB | 1..758 | 1..758 | 3852 | 100 | Plus |
| spas-PA | 758 | CG5977-PA | 1..758 | 1..758 | 3852 | 100 | Plus |
| spas-PD | 696 | CG5977-PD | 1..696 | 1..758 | 3289 | 88.8 | Plus |
| spas-PC | 696 | CG5977-PC | 1..696 | 1..758 | 3289 | 88.8 | Plus |
| CG3326-PB | 523 | CG3326-PB | 24..520 | 303..754 | 730 | 34.9 | Plus |
