Clone BO25778 Report

Search the DGRC for BO25778

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:257
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG5614-RA
Protein status:BO25778.pep: Imported from assembly
Sequenced Size:1108

Clone Sequence Records

BO25778.complete Sequence

1108 bp assembled on 2010-06-29

GenBank Submission: KX795086

> BO25778.complete
GAAGTTATCAGTCGACATGAGTTCGCATAAGATTAACCTGGAGAATGCCT
ACCAGAAGATGATAGAACAGAATATCAAAAGTCAGTTGGAGAAAAATGGA
ACCATGGCGGCACTACGGAGCGAAATGCACGTGAAGATCCTCCAGATGAT
ACGTGGCCAGCAGAATAAGTCCAAAGTCCAAGCACTCACTGGTGGATCCA
ATCAATCGGAGGATCACAGCCTGGTCAAGCTGATCAACCAGATGATTATG
GAGTTCCTCGATTGGTTCGGCTACAAGCACACCATGGAAACATTTCGCAT
GGAGACGGGTGAAAACGTGGCCAATCGCAGGGAGATGGAACAAAGTCTAC
ACATCACACCCGAGTCAAAGGATTTTCCGCTCCTGGCTCAACTAGTTATG
CGCGATTGGAAGTTCGGTGTGCAAAAAGGAGGTTCCAAAAAGTTGGTTCA
GCTACCGGATCCTATGGAGGCCACTGTGCAAAGGAGTCGAAAATTGGTAC
AGGAACTAAAAGTTATGAGAGCACAAAAATCAGAAGTTAACCAAGGCAGA
CTAGTTCAAAACAATCGAAAACTCATCACTAATAATACGTTCACGAAAGG
TCTCACACCCAAGAGCATTAGTACTCCACCTCGTTCGATCAAGAACGAGA
ATCCGAAGTCATACGTAGATAGTTCTGAATCCGATGTCCTGGAATCTGAT
TACAGCGAAGAAGAATCGGAGGACAGTGACGCATATAAGGACATACCCGA
TAGACAGATATTTATCGATGACTTGCCGCCAGAGGGAAAATATGCCCCAA
ATTATGGAGAAGAAGGTCCTTTTGAGGGTAAACAAAATCAGGCAAATGAA
CGCGACAATATTCCGAGCACATCGAGGAAGCAACATTTTTCAAGGAAGCC
AGAAACTGAAAGTTCCGACTCTGATGATAAGCCTTCGATCAGTGGAATAA
ATAAAGTTTCAAGGCAGGACTATTGGAATTCCCCGCGAGGAGTGCAACTA
CGGAACAAAAATACCTTAAAACCGGAGGAAGAATGTGATACCCACATAAG
AAAAGTCAATTTAGACAGCGATTACAGCTCGGATGAAGATGCAAGCTTTC
TAGACCAT

BO25778.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-RA 1077 CG5614-PA 1..1074 17..1090 5340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-RA 1288 CG5614-RA 105..1179 16..1090 5345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15779909..15780983 16..1090 5345 99.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:39:45 has no hits.

BO25778.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:24 Download gff for BO25778.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1179 17..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:24 Download gff for BO25778.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1179 17..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:28 Download gff for BO25778.complete
Subject Subject Range Query Range Percent Splice Strand
CG5614-RA 106..1179 17..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:28 Download gff for BO25778.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15779910..15780983 17..1092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:24 Download gff for BO25778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11605632..11606705 17..1092 99   Plus

BO25778.pep Sequence

Translation from 16 to 1108

> BO25778.pep
MSSHKINLENAYQKMIEQNIKSQLEKNGTMAALRSEMHVKILQMIRGQQN
KSKVQALTGGSNQSEDHSLVKLINQMIMEFLDWFGYKHTMETFRMETGEN
VANRREMEQSLHITPESKDFPLLAQLVMRDWKFGVQKGGSKKLVQLPDPM
EATVQRSRKLVQELKVMRAQKSEVNQGRLVQNNRKLITNNTFTKGLTPKS
ISTPPRSIKNENPKSYVDSSESDVLESDYSEEESEDSDAYKDIPDRQIFI
DDLPPEGKYAPNYGEEGPFEGKQNQANERDNIPSTSRKQHFSRKPETESS
DSDDKPSISGINKVSRQDYWNSPRGVQLRNKNTLKPEEECDTHIRKVNLD
SDYSSDEDASFLDH

BO25778.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5614-PA 358 CG5614-PA 1..358 1..358 1855 100 Plus